Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g614 ATGCAAGCCTCTCAGAAACATGGAATTTCAGGTAGGTCTGGCAGTTTCTACAGCCAGCCTGTGCCACAGGATGACCAAGGGATGCACTTCTCTGGCCCGACCTATTGTGAGCAATACGGCACCCATGAATCATCCTCAGCAACTGGTAGTTTCCCCATCTACAATTCTCCATCTACTGTGAGTTTCTCTCCTGAGGGCAGCCCTGCGTCGCAGCAGGATTCTCAAACATACCCATCAGACCAGCTTCATTCCCCTGAGAATGGACATGGCTCTCCAATAAGCGGATCCTGTCTGACAGATGATGTCAATGAGCTGAGACACAAGCTCAGGGAATTGGAAACTGCTATGCTGGGGCCTGATTCAGACATTCTTGATGTGCACGAAGTCATTCCACGTGAACTCAACAAAATTTCATTGGAGAGGGAGAAGTGGAAACAGATGATGGAGGTGATCTCCAGAGGAGACTTGAAGGAAGTCCTTGTTAGTTGTGCAAAAGCAGTAGCAGACAATGATATATTGAGGGCTGAATGGGGGATTTCGGAGCTACGTCAGATGGTATCGGTTTCTGGTGAGCCAATTCAGCGGTTAGGAGCTTACATGTTGGAAGGACTAGTTGCAAGGTTGGCTGCTTCAGGAAGCTCCATCTATAAAGCTCTAAGGTGCAAAGAGCCGGCAAGTGCTGAACTCCTCTCATACATGCACTTGCTCTTTGAAATCTGCCCATACTTCAAGTTTGGGCATATGTCTGGAAATGGGGCTATTGCCGAAGCAATGAAGGATGAAAGCAAAGTCCATATAATTGATTTTCAGATTTCACAGGGCGTCCAGTGGATCACCCTAATCCAGGCTCTTGCGGCTCGGCCTGGTGGACCACCACAGATCCGTATCACAGGTATTGACGATTCTACATCAGCTTATGCCAGAGGGGGAGGACCCAGTATTGTGGGACAGAGGCTATCTAGGTTTGCTGAGTCATGTAAAGTACCATTCGAGTTCCATGCTGCTACCATTTCTGGTTGTGAGGTTCAGCTCGAAGATCTTGAGCTTCGACCAGGAGAAGCACTGGCTGTGAATTTTGCATTCATACTGCACCACATGCCTGATGAGAGTGTTGACACTCAGAATCATCGTGACAGACTGTTGAGGCTGGTTAAAAGCTTGTCCCCCAAGGTGGTGACTCTTGTTGAGCAAGAATCCAACACCAATACTGCTCCATTCCTTTCCCGATTCATTGAGGCCATGAACTATTATTTAGCTGTTTTTGAGTCAATTGATGTAACTTTGCCAAGGGATCACAAGGAGCGGATCAATGCTGAGCAGCACTGTCTGGCCCGAGAAATTGTCAACATAATAGCATGTGAGGGGGCTGAGAGAGTGGAACGACATGAACTTCTGGGGAAGTGGAAGTCACGATTTCTTATGGCTGGTTTTACTCCCCACCCGCTAAGCTCCTATGTGAATGCCACCATCAAGACTCTGCTGCAGAATTACAGTGACAAGTATTCACTTGAAGAGAAAGATGGAGCTCTCTATCTTGGCTGGATGGACCGAGCTCTAGTTGCTGCTTGTGCATGGAGTTGA 1581 47.88 MQASQKHGISGRSGSFYSQPVPQDDQGMHFSGPTYCEQYGTHESSSATGSFPIYNSPSTVSFSPEGSPASQQDSQTYPSDQLHSPENGHGSPISGSCLTDDVNELRHKLRELETAMLGPDSDILDVHEVIPRELNKISLEREKWKQMMEVISRGDLKEVLVSCAKAVADNDILRAEWGISELRQMVSVSGEPIQRLGAYMLEGLVARLAASGSSIYKALRCKEPASAELLSYMHLLFEICPYFKFGHMSGNGAIAEAMKDESKVHIIDFQISQGVQWITLIQALAARPGGPPQIRITGIDDSTSAYARGGGPSIVGQRLSRFAESCKVPFEFHAATISGCEVQLEDLELRPGEALAVNFAFILHHMPDESVDTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFLSRFIEAMNYYLAVFESIDVTLPRDHKERINAEQHCLAREIVNIIACEGAERVERHELLGKWKSRFLMAGFTPHPLSSYVNATIKTLLQNYSDKYSLEEKDGALYLGWMDRALVAACAWS* 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7772105 7775176 - Vvi19g614 Vvi19g614 782113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g614 526 Pfam GRAS domain family 156 525 IPR005202 -
Vvi19g614 526 MobiDBLite consensus disorder prediction 1 99 - -
Vvi19g614 526 ProSiteProfiles GRAS family profile. 147 526 IPR005202 -
Vvi19g614 526 MobiDBLite consensus disorder prediction 37 98 - -
Vvi19g614 526 MobiDBLite consensus disorder prediction 1 25 - -
Vvi19g614 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 525 IPR005202 -
Vvi19g614 526 PANTHER GIBBERELLIN-RESPONSIVE PROTEIN, PUTATIVE-RELATED 18 525 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g674 Vvi19g614 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14431 PF03514 GRAS 7.20E-137 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g614 - - vvi:100250258 1044.26