Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g617 ATGGCTGCTTTCTATCTCTACACGTTCAACCTCATTCCTCATTCTCACTCTCCTTCTGCTTCATCAAACCCTGATTCACTCTCGAATCTCAATTCCATCAGTGCAAAAATCGATAAAAGAAGAAGCAGTTGCAGAACCAGTGGGTTCACTGTGCTGTCTACGCACTCTAATCCTAGAATTCTCAAGTCCAATCGCAGGTCACGCTACGGACAAGTGCTCTCGCCTTACGATACTGATGACAATGCGGGGGATGAGGATGGAGATTGGTTCTTCGATGATGAAGATTCTGAGACAGAAGAGTTTGATGCTGATCGGAAAAAATTTAATTCACAGAAGGGGAATGATACAAGACAAGGTAGCCGGAGACAACTAGAAGAAGACCAGAGCATTAGATCATTAAAATCTGAAGGAAGTTTTAATATTTCCAAAGGAGAATTGGATGTCAAAAATGGGAAAAACACCATTGGGAGTTCTTATCATACTTTCAACAAATCAGAAGATTATGATTCATCAGAAATGCATGGGATAGGAAAGCTGAAGCCCAGGAAATCTACAGAGAACAAATACTGTCGATTATCAGAAGAAATAGATTTAGATGAGAAATGGTTTCCACTTCTTGATTACCTGAGCACTTTTGGACTTAAGGAATCGCATTTTATCCAAATGTATGAGAGGCACATGCCTTCCCTTCAGATTAATGCATGTTCTGCACAGGAAAGGTTGGAGTACTTGTCAAGTGTTGGTGTCAAACACAGAGACATCAAAAGAATTATTTTGAGGCAGCCACAAATTCTAGAGTATACAGTGGAGAACAATCTGAAGTCCCATGTTGCTTTTTTGGTGGGTTTGGGTATTCCAGATTCTAGAATAGGGCATGTAATTGCTGCTGCTCCATCTTTGTTTTCTTATAGTGTGGAGAATTCATTGAAACCCACAGTGAGGTACTTGATCGAAGAGGTTGGCATTAAGAAAAATGATTTAGGGAAAGTCGTGCAGTTAAGCCCTCAAATACTGGTTCAGAGGATTGACAATTCATGGAACACCCGCTATAGTTTTCTCTCAAGAGAATTGGGAGCTCCCAGAGATAGTATAGTGAAAATGGTTACTAAACATCCCCAGCTTCTTCATTACAGCATTGAGGATGGATTTCTGCCTAGGATAAATTTCCTGAGAAGTATTGGAATGCGTAATTCTGACATCTTGAAAGTTTTAACAAATCTTACACAGGTACTATCTCTATCACTGGAGGATAATCTAAAGCCTAAGTACATGTACTTGGTCAATGAACTTCGAAATGAGGTTCATTCCTTGACCAAATATCCTATGTATCTAAGCTTGTCTTTGGACCAGAGAATTCGTCCTCGCCATAGAGATTACTACTCAAAGATTTTGCAAAGAAGTATGAGAAGCGAAGATAACAGATCTATTTCAACTTTGTCATAA 1443 39.5 MAAFYLYTFNLIPHSHSPSASSNPDSLSNLNSISAKIDKRRSSCRTSGFTVLSTHSNPRILKSNRRSRYGQVLSPYDTDDNAGDEDGDWFFDDEDSETEEFDADRKKFNSQKGNDTRQGSRRQLEEDQSIRSLKSEGSFNISKGELDVKNGKNTIGSSYHTFNKSEDYDSSEMHGIGKLKPRKSTENKYCRLSEEIDLDEKWFPLLDYLSTFGLKESHFIQMYERHMPSLQINACSAQERLEYLSSVGVKHRDIKRIILRQPQILEYTVENNLKSHVAFLVGLGIPDSRIGHVIAAAPSLFSYSVENSLKPTVRYLIEEVGIKKNDLGKVVQLSPQILVQRIDNSWNTRYSFLSRELGAPRDSIVKMVTKHPQLLHYSIEDGFLPRINFLRSIGMRNSDILKVLTNLTQVLSLSLEDNLKPKYMYLVNELRNEVHSLTKYPMYLSLSLDQRIRPRHRDYYSKILQRSMRSEDNRSISTLS* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7803503 7814106 + Vvi19g617 Vvi19g617 782116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g617 480 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF9, CHLOROPLASTIC 39 461 - -
Vvi19g617 480 SMART mt_12 255 286 IPR003690 GO:0003690|GO:0006355
Vvi19g617 480 SMART mt_12 401 433 IPR003690 GO:0003690|GO:0006355
Vvi19g617 480 SMART mt_12 328 360 IPR003690 GO:0003690|GO:0006355
Vvi19g617 480 SMART mt_12 365 396 IPR003690 GO:0003690|GO:0006355
Vvi19g617 480 SMART mt_12 291 323 IPR003690 GO:0003690|GO:0006355
Vvi19g617 480 SMART mt_12 434 467 IPR003690 GO:0003690|GO:0006355
Vvi19g617 480 MobiDBLite consensus disorder prediction 79 99 - -
Vvi19g617 480 PANTHER CGI-12 PROTEIN-RELATED 39 461 IPR003690 GO:0003690|GO:0006355
Vvi19g617 480 MobiDBLite consensus disorder prediction 63 130 - -
Vvi19g617 480 Gene3D Transcription termination factor 3, mitochondrial 264 479 IPR038538 -
Vvi19g617 480 MobiDBLite consensus disorder prediction 100 130 - -
Vvi19g617 480 Pfam mTERF 206 281 IPR003690 GO:0003690|GO:0006355
Vvi19g617 480 Pfam mTERF 269 467 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g617 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - vvi:100260706 857.055
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g617 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0026 Cone9ag0025 . . . . . . . . . . . . Bma07g01269 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g00946
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002407 4 3 3 3 1 1 2 1 2 2 1 1 2 2 2 1 1 4 2 2 1 1 0 2 2 1 2 5 2 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14432 PF02536 mTERF 9.80E-38 No_clan Vvi TR