Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g619 ATGGATTTTTCTGAGTCCACAGCAGTTGTTTTCAATAGAATTCAAAAACTAGAACCAGAGAATGTTTCAAAGATTATAGGGTATCTTCTTGTTAAGGGTTTTAGTAAGGGAGAAATGATTCGGTTGGCTTTTGGTCCCGATAAGGCGATTCGTATGATAATTGAAGGGGTCAAAATAGAGCTTGGTTTGATTCCAAATCCACCATCTCCAATCTCTCCTCACTTCCCTCCTCTCTCTCCTTCAACTGGTTCTTGGTTCCCTTCATCTTCTCCGTCTCCCGTGAACCGATATCTCCAACATGCTACAGAGCAACTACCAAAAGATTATAGTCTCCAAAGTCAGCCTTTGGGTTTAGAGGAACAGTTAGAACAGGTCAACCCAGCAATTTTAGGAGTTTCCGGTGATTACTATTACCCGGAGACGGCAGTGGAAAATTTGAGTGTGAGGACGGGTCCAAGATCTCTGATTGGTTCGGAATTTCCAGTTAAGGTTTGTCACTATTTCAACAAGGGGTTTTGTAAGCATGGAAATAATTGTCGATACTTGCATGCACAAGTCTTTCCTGAGGTTTTAAGCCCTATTGCAAATGATCTTGCTAATGATGATCATATTTTCTCACCTGGTTCAATCGAGAAGTTGGAATTGGAGTTAACAGAGCTCCTGAAATCAAGAAGAGGCAATCCTGTCTCCATTGCCTCTCTGCCTATGATGTATTATGAGAGATATGGTAGGGGTCTTCAGGCTGAAGGGTACCTCACTGAGAGCCAACGACATGGGAAAGCTGGTTATAGTTTGACAAAGCTTCTTGCTCGGTTGAGAACCATTCGACTAATTGACAGGCCTCATGGGCAGCATTCAGTAATTTTGGCAGAAGACGTGCCAAAATACATGGAAAGCCGGAGTGAGAGGAGTGACCCTGGTCCAATTGTAAGTGGTTCCCGGCAGATATATCTGACATTTCCAGCTGAGAGTACTTTTACTGAAGAAGATGTCTCTGACTACTTCAGCACCTTTGGACTGGTTGAGGATGTGAGGATTCCCTGCCAGCAGAAACGGATGTTTGGGTTTGTAACCTTTGACAGTTCTGATACCGTGAAGAGCATTTTGGCCAAGGGAAGTCCACATTATGTTTGTGGGGCTCGTGTTCTTGTGAAACCTTACAGAGAAAAGCCAAGGACTGGTGATAGGAAATATTTAGAGAAATTTGAGTCTTCAATGTATTATCCTTTGCAATATGCAGACATGGATTCCGAGCTTCACATGATGCCTAGAGGAATGGAGACCTCAAGATTGCTCAGAAAGCAGATTATGGAAGAGCAAGAGTTTGCACAGGATCTTGAATTTGAGACAAGGCGTCTCTCCAAGCTGCAGCTAGCACGAAATCCTCTGGCCAATCAGCTCCACCATGGCTATTCCTTGGATGAACTAAAAGTCTTGGAAGCACATGCAAATCATTCCAAGTTCCCGACTGTTGTCCATTCCAATTATCCATTGGATGTTTCAAACAATGGCTCTACAAGTGATGATAAGCCATGGCGTGCAGTCAACAACCCCATCGATCATAAGAGTTCAGGTCTTGAACTCCCGGATAGCCCATTTGCATTTCCGATAGGAAGCAGCATTTCTACAATATAG 1635 43.49 MDFSESTAVVFNRIQKLEPENVSKIIGYLLVKGFSKGEMIRLAFGPDKAIRMIIEGVKIELGLIPNPPSPISPHFPPLSPSTGSWFPSSSPSPVNRYLQHATEQLPKDYSLQSQPLGLEEQLEQVNPAILGVSGDYYYPETAVENLSVRTGPRSLIGSEFPVKVCHYFNKGFCKHGNNCRYLHAQVFPEVLSPIANDLANDDHIFSPGSIEKLELELTELLKSRRGNPVSIASLPMMYYERYGRGLQAEGYLTESQRHGKAGYSLTKLLARLRTIRLIDRPHGQHSVILAEDVPKYMESRSERSDPGPIVSGSRQIYLTFPAESTFTEEDVSDYFSTFGLVEDVRIPCQQKRMFGFVTFDSSDTVKSILAKGSPHYVCGARVLVKPYREKPRTGDRKYLEKFESSMYYPLQYADMDSELHMMPRGMETSRLLRKQIMEEQEFAQDLEFETRRLSKLQLARNPLANQLHHGYSLDELKVLEAHANHSKFPTVVHSNYPLDVSNNGSTSDDKPWRAVNNPIDHKSSGLELPDSPFAFPIGSSISTI* 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7815547 7820515 - Vvi19g619 Vvi19g619 782118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g619 544 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 544 - -
Vvi19g619 544 SMART c3hfinal6 159 185 IPR000571 GO:0046872
Vvi19g619 544 Gene3D - 158 243 - -
Vvi19g619 544 SMART rrm1_1 315 385 IPR000504 GO:0003723
Vvi19g619 544 Pfam OST-HTH/LOTUS domain 209 287 IPR025605 -
Vvi19g619 544 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 370 IPR000504 GO:0003723
Vvi19g619 544 ProSiteProfiles OST-type HTH domain profile. 209 291 IPR025605 -
Vvi19g619 544 ProSiteProfiles Zinc finger C3H1-type profile. 159 186 IPR000571 GO:0046872
Vvi19g619 544 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 163 184 IPR000571 GO:0046872
Vvi19g619 544 CDD RRM_AtC3H46_like 316 385 IPR034365 -
Vvi19g619 544 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 389 IPR000504 GO:0003723
Vvi19g619 544 Gene3D - 320 393 IPR012677 -
Vvi19g619 544 SUPERFAMILY CCCH zinc finger 161 184 IPR036855 GO:0046872
Vvi19g619 544 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 544 - -
Vvi19g619 544 SUPERFAMILY RNA-binding domain, RBD 325 394 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g619 - - - vvi:100243592 1060.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g675 Vvi19g619 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g619 . . . . Bpe09g00132 . . Bma13g01110 Cmo16g00984 . . . . . . . . . . . . . . . Cla10g00430 Cam10g0428 Cec10g0450 Cco10g0440 Clacu10g0435 Cmu10g1266 Cre10g0683 . . Cone14ag1209 Cone15ag1226 . Csa03g00438 . Cme06g02784 . . . Bda12g00954 . . . . Sed08g2938 . . . Cma16g00946 . Car16g00909 Cpe14g00769 . Bhi11g00494 Tan01g1811 . . . . . . . . . . . . Lsi05g00520 . Chy06g01879 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002118 2 2 1 2 1 1 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 2 2 1 11 6 2 65