Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g620 ATGAGTACAAGTTGGGAAGAGTCATTCGAACTTTTTGAAAAAGTGGTTGCGTCCGGCAGAAATGCTATGCAAATTCGAGCCATAATCAAGCTTGCCCGCCTCTCTAATTCTGCACCGGCCCATGTACTAACCCGCACCGTGCCGATCCTCACGCGGCTTCTTGGTAGCAGTTCTAGTCCATCCGTCCAAGGGGCCTCTGCATATTGCTTAAAATGCATAGCTCATCAAGGTGATGGGGATCGGATGGCAATACTCATTGGGCAGTATGGTGCTATTCCTATAGCACTGAGGCTGCTGCAGCATTCTGAAGGTAGTTTTCAGAGGGTTTTGGTAAAATGTCTTTGGAGCCTTGTCATATTTGGAAAACATAATCGGGTAATTCTCGTTAGAAATGGTGGATTGGAGATCATAATCCGTATGTTGGGTTCATACACAGGTAGGATGAGGCAGTATTTGTTAGAAATATTAAGTGCATTGGCATTGTTGCGGGAGGTTAGAAGGGTGATAATCAGTCTTGAAGGCCTTCGGTTTCTCGTTCAGGCTGTCAAGTTTGGTGGCATGGCCTCTAGAGAAAGGGCTGCCCATGCGGTTGGGTGTCTTGGAGTGGCAAAAAAGGCGAGGCGTGTGCTTGTTGATTTGGGAGCAATGCACATGCTCATTGAGTTGTTCAGAGAAGGAGATGCTTGCACAAAATTGGTAGCTGGTAATGCTCTTGGTGTGATCTCATCCCATATTCACTGCATTAGGCCATTTGCCCAAGCTGGGGCTATACCTTTGTATGTGGAGCTGCTTCGGGGACATGATCCCATCGGTAAGGAGATTGCAGAGGATGTGTTCTGTGTCTTGGCTGTTGCAGAAGTGAATGCAGTTGCAATCACTGAACACTTGGTGGAAATCCTTCGAGAAAATGATGATGTAGCCAAGGCTGCAGCTGCTGATATATTGTGGGATCTCTCCAGTTACCATCATTCAGTGTCTTTCATTAGAAACTCTGGCGCAATTCCAATTTTTGTTCAGCTTTTGAGGGATAGAAGCAGTGAAGTTAGGGAGAAAGTATCAGGGGCCATTGCTCAATTGAGTTATAGTGCAGGAGACCGCGCAGCACTTGCTGAGGCAGGTGCAATTCCGGTCCTGATCGATTTGTTGGGCGATGAGTCAGAGGAGCTGAGAGAAAATGCTGCAGAAGCTCTCATCAGTTTTTCCGAAGACCCTTCACAGCGCGGCATAATGTCCGAAGCATTCAGAGTTACTTCATTCCAGGAAATGCAGAACAGACTGGTACAGATTCGAAGTTCTGATGAGTACATGGCCAGATCTTTGAGACAGATGAGCATGGAGCAGCTTCTTTGGGACCCAGACATGGCTTCAATTTTTGGTGACCAAAAACAGGAATGA 1395 46.81 MSTSWEESFELFEKVVASGRNAMQIRAIIKLARLSNSAPAHVLTRTVPILTRLLGSSSSPSVQGASAYCLKCIAHQGDGDRMAILIGQYGAIPIALRLLQHSEGSFQRVLVKCLWSLVIFGKHNRVILVRNGGLEIIIRMLGSYTGRMRQYLLEILSALALLREVRRVIISLEGLRFLVQAVKFGGMASRERAAHAVGCLGVAKKARRVLVDLGAMHMLIELFREGDACTKLVAGNALGVISSHIHCIRPFAQAGAIPLYVELLRGHDPIGKEIAEDVFCVLAVAEVNAVAITEHLVEILRENDDVAKAAAADILWDLSSYHHSVSFIRNSGAIPIFVQLLRDRSSEVREKVSGAIAQLSYSAGDRAALAEAGAIPVLIDLLGDESEELRENAAEALISFSEDPSQRGIMSEAFRVTSFQEMQNRLVQIRSSDEYMARSLRQMSMEQLLWDPDMASIFGDQKQE* 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7834636 7836831 + Vvi19g620 Vvi19g620 782119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g620 464 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 2 453 - -
Vvi19g620 464 Gene3D - 285 427 IPR011989 -
Vvi19g620 464 ProSiteProfiles HEAT repeat profile. 374 412 IPR021133 -
Vvi19g620 464 SUPERFAMILY ARM repeat 26 160 IPR016024 -
Vvi19g620 464 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 373 407 IPR000225 GO:0005515
Vvi19g620 464 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 332 374 IPR000225 GO:0005515
Vvi19g620 464 PANTHER U BOX DOMAIN-CONTAINING 2 453 - -
Vvi19g620 464 SUPERFAMILY ARM repeat 164 410 IPR016024 -
Vvi19g620 464 SMART arm_5 121 161 IPR000225 GO:0005515
Vvi19g620 464 SMART arm_5 362 402 IPR000225 GO:0005515
Vvi19g620 464 SMART arm_5 36 75 IPR000225 GO:0005515
Vvi19g620 464 SMART arm_5 321 361 IPR000225 GO:0005515
Vvi19g620 464 SMART arm_5 280 320 IPR000225 GO:0005515
Vvi19g620 464 SMART arm_5 203 243 IPR000225 GO:0005515
Vvi19g620 464 Pfam HEAT repeats 294 397 - -
Vvi19g620 464 Gene3D - 13 284 IPR011989 -
Vvi19g620 464 ProSiteProfiles HEAT repeat profile. 333 371 IPR021133 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g620 - - - vvi:100248730 848.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g620 . . . . . . . . . . . . . . . . . Bhi09g01735 . . . . . . . . . . . . . . . . . . Csa07g00960 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012085 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 2 4 1 1 1 1 2 29