Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g621 ATGGATCAGCCGGAAGCAAAGCAACAAAAGATGAGTTTGGATTGGGAAGAGTCATTTAACCTTTTTGAAGAAGCGGTTGCTTCTGAGAGTACTGCTATGCAAATTCAAGCCATAATCAAGGTCGCCCAGCTTTCTAATTATGCACCGGACAATGTACTAACACGTGCGGTGCCAATCCTCACACAGCTTCTTGGCGGTAGCTCCAGTCCATTGGTTCAAGAAGCCGCTGCTTATTGCTTAAAATGCATAGCCCATCAAGGTGATCTGGATGATCGGTTGGCAACACTCATTGGGCAGTCTGGTGCTATTCCTATTACACTCAGACTGTTGCAGCATTCCCACGGTGGCCTTCAGGGAGTTCTAGTGAAATTTCTTTGGAGCATTGTTACATTTGGTACACACAATAGGGTAATCGTAGTTAGAAATGGTGGATTGGAGGTCATAATCAATATGTTAGGGTCATGCGTGGGTAGTACGAGGCGGCACTTGTTAGAGATATTAAGCGCATTGGTGTGGTTGAGAGAGGTGAGGAGGGTCATAACCAGTCCAGAAGGCCTTCAGTTTCTTGTTGAGGCGGTCAAGTTCGGTGGCATGGCCTCTAGGGAAAGGGCTGCTTATGCGGTGGGGTCGCTTGGAGTGGCAAGAAGCGCTAGGACTGTGCTTGTTGATTTGGGAGCAATGCAGGCGCTTATGGAGTTGCTCAGAGAGGGAGACATCTCGGCAAAATTGGTAGCTGGCAATGCACTGGGGGTGATCTCAGCGAACGTGGACTGCATCAGGCCACTTGCTCAAGCCGGGGCTATTCCTTTGTACGCAGAGCTGCTCCGGGGAGCAGAGCCCGTGGGGAAGGAGATTGCGGAGGATGTGTTTTGTGTCTTGGCTATTGCAGAAGTGAATGCAGTCTCAATCGCTCAGCACTTGGCGCAAATCCTTAGAGAAAACGATGATATTGCCAAGGCTGCAGCTGCCGAAATTTTAGGCCATCTCTCGAGATACAAACATTCAGTGCCCTTTATCACAAACTCTGGTGCGATTCCGGTTCTTGTTGAGCTTCTGAGGCAGGGGAGTGATGAAGTGAAAGAGAAGGCATCAGGGGCCATTGCTCAGTTGAGCTATAATGCAGGAGACCGAGCAGCCCTAGCGGACGCCGGCGCAATTCCGATTCTGATGGATTTATTGGGTGATGATCAATCAGAGGAGCTAAGAAATAAAGCTGCAGAAGCTCTCATCAGTTTTTCTGAAGACCCTTCACAGCGTGACAGAATATCTGAGGCATTCAACATTACTTCATTCCAGGACATCCACAACAGACTGGCACAGCTTCGTGCTCCCGATAATAATGGCGAGCAAATGGCCAGACCTTCGAGACAGATGATGAGCATGGAGCAGCTTCCTTGGGACCCTAATATTCTCTAA 1416 49.08 MDQPEAKQQKMSLDWEESFNLFEEAVASESTAMQIQAIIKVAQLSNYAPDNVLTRAVPILTQLLGGSSSPLVQEAAAYCLKCIAHQGDLDDRLATLIGQSGAIPITLRLLQHSHGGLQGVLVKFLWSIVTFGTHNRVIVVRNGGLEVIINMLGSCVGSTRRHLLEILSALVWLREVRRVITSPEGLQFLVEAVKFGGMASRERAAYAVGSLGVARSARTVLVDLGAMQALMELLREGDISAKLVAGNALGVISANVDCIRPLAQAGAIPLYAELLRGAEPVGKEIAEDVFCVLAIAEVNAVSIAQHLAQILRENDDIAKAAAAEILGHLSRYKHSVPFITNSGAIPVLVELLRQGSDEVKEKASGAIAQLSYNAGDRAALADAGAIPILMDLLGDDQSEELRNKAAEALISFSEDPSQRDRISEAFNITSFQDIHNRLAQLRAPDNNGEQMARPSRQMMSMEQLPWDPNIL* 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7842955 7844371 + Vvi19g621 Vvi19g621 782120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g621 471 ProSiteProfiles HEAT repeat profile. 385 424 IPR021133 -
Vvi19g621 471 PANTHER U BOX DOMAIN-CONTAINING 4 465 - -
Vvi19g621 471 SMART arm_5 214 254 IPR000225 GO:0005515
Vvi19g621 471 SMART arm_5 45 85 IPR000225 GO:0005515
Vvi19g621 471 SMART arm_5 332 372 IPR000225 GO:0005515
Vvi19g621 471 SMART arm_5 373 414 IPR000225 GO:0005515
Vvi19g621 471 SMART arm_5 255 295 IPR000225 GO:0005515
Vvi19g621 471 SMART arm_5 90 130 IPR000225 GO:0005515
Vvi19g621 471 SMART arm_5 132 172 IPR000225 GO:0005515
Vvi19g621 471 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 4 465 - -
Vvi19g621 471 Pfam HEAT repeats 305 409 - -
Vvi19g621 471 SUPERFAMILY ARM repeat 12 422 IPR016024 -
Vvi19g621 471 Gene3D - 305 458 IPR011989 -
Vvi19g621 471 Gene3D - 16 301 IPR011989 -
Vvi19g621 471 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 343 385 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g621 - - - vvi:100253827 887.1
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g621 . . . . . . . . . . . . . . Sed04g3674 . . Bhi09g01736 Tan01g3167 Cmetu01g0479 . . Mch11g1246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012085 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 2 4 1 1 1 1 2 29