Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g623 ATGGTGGTGTTGAGAGGCGCTTGGCCAAAGACGTTACAGCTCTTACGCGTTTTTAAGGATCAAGGTCTGATTTTGGCTGCGCTTTTGGGTCTCTCTGCATTTTTCTCCATGGCTGAAACTTCAATTACCACACTTTGGCCTTGGAAGGTGCGTGAGTTAGCTGAAAAGGAGTCTGAGAATGGTGTCTTCAAAATGCTCCGCAGTGATGTTACTCGTTTCTTAACGACTATACTTATAGGCACAACTGTGGTCAATATTGGAGCAACTGCACTAGTCACAGAGGCTGCAACACAAATTTTTGGCGAAGCTGGTATTACTGCAGCAACTGCAGTAATGACTGTTGCAATTTTGCTTCTCACTGAAATTACTCCAAAAAGCCTAGCTGTCCATAATGCCACAGAGGTTGCTAGGTTTGTGGTCAGGCCAGTGGCGTGGCTTTCGTTTATATTATATCCTGTGGGAAGGGTTGTCACGTATTTATCAATGGGAATGCTAAAAATGCTTGGTTTGAAAGGAAGAAGTGAACCATATGTTACTGAAGAGGAGTTAAAGTTGATGTTGCGAGGAGCGGAATTGAGTGGGGCAATAGAGGAGGAAGAGCAGGATATGATCGAAAATGTGTTGGAGATAAAAGATACACATGTTAGAGAAGTGATGACACCTCTTGTGGATGTTGTTGCAATTGATGCCAGTGCAACACTTGTTGATTTCCATGAATTGTGGCTGACTCATCAGTACTCCAGGGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAGGGGGAGATTCTAGAAAGTTCTATTGTGGGAGATATGGCTCATAAACCTGCATACTTCGTGCCTGATTCAATGTCTGTCTGGAATCTTCTAAGAGAATTTCGCATCAGGAAGGTCCACATGGCTGTTGTTCTCAATGAGTATGGTGGAACTGTGGGAATAGTAACCCTGGAAGATGTGGTTGAGGAAATTGTCGGTGAAATCTTCGATGAGAATGATTCAAAAGAAGAGATTCAGAAGAAAACTGGTTATGTTGTAATGAAAGGTGAGGGAATATTTGATGTGGATGCAAATACATCAATTGATCAGCTCTCTGAAGATCTCAATATCAAAATGCCAGAGGGTCATCAATATGAGACAGTATCAGGTTTTATCTGTGAGGTATTTGGGTATATCCCAAGGACTGGTGAGAGCATAAAGGTGGTACTTGAAAATCAAGAAGAGAATGAAGAATATACAGAGCAAGAATCTGACCGCCAAGAACAGAAGGAGAAGCAGCACATTTTTAAGCTTGAGATATTGGCAGGAAATGCCAGAAAGGTGAGTGCTGTTCGGTTTGAACGGATAAATAATGATGATGCCGCATTGGAGACCAAAGAGGTGACTCGCTTGGTTCCCAAAATCATGAAAAGGAAATGGAGTGACGGCGAGGATTCAGATAGTGCGGATGACAAGGATTCAGATAGTGCGGACAATGATGAGGATGCCCACCAGATGAGACCAGAGGATGGCCTTTCTGATGGCTATGTAATTGCTGAACATAAAGATGATCATGACAGTCATAATGAGCAGTAG 1614 42.69 MVVLRGAWPKTLQLLRVFKDQGLILAALLGLSAFFSMAETSITTLWPWKVRELAEKESENGVFKMLRSDVTRFLTTILIGTTVVNIGATALVTEAATQIFGEAGITAATAVMTVAILLLTEITPKSLAVHNATEVARFVVRPVAWLSFILYPVGRVVTYLSMGMLKMLGLKGRSEPYVTEEELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASATLVDFHELWLTHQYSRVPVFEQRVDNIVGVAYAMDLLDYLQKGEILESSIVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYVVMKGEGIFDVDANTSIDQLSEDLNIKMPEGHQYETVSGFICEVFGYIPRTGESIKVVLENQEENEEYTEQESDRQEQKEKQHIFKLEILAGNARKVSAVRFERINNDDAALETKEVTRLVPKIMKRKWSDGEDSDSADDKDSDSADNDEDAHQMRPEDGLSDGYVIAEHKDDHDSHNEQ* 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7850869 7866048 - Vvi19g623 Vvi19g623 782122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g623 537 Pfam Transporter associated domain 360 462 IPR005170 -
Vvi19g623 537 Pfam CBS domain 215 273 IPR000644 -
Vvi19g623 537 Pfam CBS domain 283 338 IPR000644 -
Vvi19g623 537 PANTHER BNAC03G73630D PROTEIN 2 525 - -
Vvi19g623 537 MobiDBLite consensus disorder prediction 485 537 - -
Vvi19g623 537 CDD CBS_pair_CorC_HlyC_assoc 214 335 IPR044751 -
Vvi19g623 537 ProSiteProfiles CBS domain profile. 219 280 IPR000644 -
Vvi19g623 537 PANTHER HEMOLYSIN-RELATED 2 525 - -
Vvi19g623 537 MobiDBLite consensus disorder prediction 504 537 - -
Vvi19g623 537 Gene3D - 356 459 IPR016169 -
Vvi19g623 537 Coils Coil 416 438 - -
Vvi19g623 537 Gene3D - 194 349 IPR046342 -
Vvi19g623 537 SUPERFAMILY FAD-binding/transporter-associated domain-like 358 466 IPR036318 GO:0050660
Vvi19g623 537 SMART CorC_HlyC_2 359 463 IPR005170 -
Vvi19g623 537 Pfam Cyclin M transmembrane N-terminal domain 23 200 IPR002550 -
Vvi19g623 537 ProSiteProfiles CNNM transmembrane domain profile. 14 200 IPR002550 -
Vvi19g623 537 ProSiteProfiles CBS domain profile. 286 344 IPR000644 -
Vvi19g623 537 SUPERFAMILY CBS-domain pair 202 341 IPR046342 -
Vvi19g623 537 SMART cbs_1 224 273 IPR000644 -
Vvi19g623 537 SMART cbs_1 290 338 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g623 - - - vvi:100260506 981.089
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g623 . . Bda07g00396 . . . . . . . Cma01g01088 . Car01g00964 . . . . . . . . . . . . . . . . . . Cone6ag0023 Cone9ag0023 . . . . . . . . . . Bpe11g00574 . . Bma14g00305 . Cmo01g01134 . . . . . . . . . . . . . . Cla09g02052 Cam09g2140 Cec09g2207 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005841 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 2 1 1 2 1 1 38