Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g625 ATGGCGGGTCTTGAAGCCATGGTCCCGTACTCAGCTGGTGACCCTTTCGGATTTAGCGCTCAGAACATTTGCTTGGGCTACAGTTTGTATATTGTTAAGCAACACCAGTCCCAACCAATTCAATTTTTGGTGCCTGATGCTGTCTACGTCATAACTGGTCTGTTCTTGTGCTATTTGGGTTTGTGGGGGAAGAATCAAGGTGAAGAATCAATTCTTAGGGAATCCCTTTTGCATGGTAGTGCCAGTATAAGTACTAGAGTGGCGTCAAATAAATCAAAGGGGGAAGAAACTGTGACCCCGTTCTCCAATGCTGGTGTTTTTAGTCTTCTTACTTTCTCTTGGATGGGTCCCTTGATCGCCCTTGGTAATAAGAAAACATTAGACCTTGAGGATGTTCCTCAGCTTGACGCTGTCAACAGTGTTGTTGGGGGCTTTCCAATTTTTAGAAGTAAGCTCGAGGGTGATGGTGGTGGCGGTAGTGGAGTGACCACGCTTAAGCTGGTGAAAGCAATGATCCTCTCAGCATGGGCAGAAATACTATTGTCGGCTTTATTCGCCCTTCTTTACACGTTAGCTTCTTATGTTGGTCCCTATCTTATTGACACCTTCGTTCAGTACCTCAATGGCCAGCGGCAATTCAAAAATGAAGGCTACTTTCTGGTTTCAGCTTTTCTTGTTGCAAAGCTTGTTGAATGCCTTTCAATGAGGCACTGGTTCTTTAGATTACAGCAGGTTGGAATTAGGATGAGAGCAGTACTGGTCACAAAGATCTACAACAAAGTTTTGGCTGTTTCATACCACTCAAAGCAGTGTCATACTAGTGGGGAGATCATCAATTTCATTTCTGTTGATGCTGAGAGAATTGGTGACTTTGGTTGGTACATGCACGATCCATGGATGGTGACTTTGCAAGTTGCTTTGGCATTGTTGATCTTGTATAAAAATCTTGGTCTTGCTTCAATTGCAGCTTTCTTTGCAACAGTAATTATTATGTTGGCAAATGTTCCACTGGCGAAATTCCAAGAGAAGTTCCAAGACAAGCTAATGGAATCGAAAGATAAAAGGATGAAGTCAACATCCGAGATCTTGAGGAACATGAGGATTCTCAAGCTTCAGGGATGGGAAATGAAGTTTTTATCTAAAATTGTTGACTTACGGAAGAATGAGACAGGGTGGTTGAAAAAATATCCTGATGTTGTCGAGAAGCTTCCAAAAGGTACTTCTAGCACAGCAATTGAGATAGTAAATGGGAATTTCTCTTGGGATTTATCTTCCCCTCATCCAACATTGAAGGATATTAATTTGCAAGTGCATCATGGCATGAGGGTTGCTGTTTGTGGTGCTGTTGGCTCAGGAAAGTCAAGCTTACTTTCTTGTATCCTGGGTGAAGTGCCCAAGATATCTGGTACCCTTAAGCTGAGTGGAACAAAGGCATATGTTGCACAGTCGCCTTGGATACAGGGTGGCAAGATAGAAGAAAACATCTTGTTTGGCAAGGAGATGGACAGAGAAAGGTATGAAAGGGTCCTGGATGCATGTACCTTGAAGAAGGACCTGGAGATCCTCCCATTTGGTGATCAGACGGTTATAGGTGAGCGAGGAATCAATTTGAGTGGTGGGCAGAAGCAAAGAATTCAGATCGCACGTGCACTTTACCAAGATGCGGATATTTATCTGTTTGATGATCCTTTTAGTGCTGTTGATGCTCATACAGGCACCCATCTTTTCAAGGAATGTTTGCTGGGCCTCTTGGATTCAAAAACAGTGGTTTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGATCTCATATTGGTCATGAAAGAAGGAAGAATTACACAGGCTGGAAAGTACAATGACATTCTCAACTATGGAAGTGATTTTGTGGAGCTTGTGGGTGCACATAAGAAAGCCTTATCAGCACTTGAATCCATAGAGGCAGAAAAATCAAGTATCATGAGTGAGAACAAAGAAAACAGAAATGGGCAAACTGGAAACATAGAAGGCACGGATGGGCCAAAAGCCCAGCTCGTTCAAGAAGAGGAGAGAGAGAAAGGTAAAGTTGGATTTTCAGTTTATTGGAAATATATCACAACAGCATATGGAGGAGCTCTTGTGCCCTTTATATTGCTGTCACAAATTCTCTTTCAGCTGCTTCAAATTGGAAGCAATTATTGGATGGCTTGGGCAACACCTGTGTCAGAGGATGTGAAACCTGCGGTTGGTGGCTCTACTCTTATACTTGTCTATGTAGCTTTGGCCATTGGAAGTTCTCTTTGTGTCCTTTCCAGAGCCATGCTTGTTGTAACAGCTGGTTACAGGACAGCTACTATACTCTTCAATAAAATGCATTTGAGCATTTTCCGTGCCCCAATGTCATTCTTTGATGCCACCCCAAGTGGACGAATCCTAAACAGAGCTTCTACAGACCAAAGTGCAGTGGACATGGATATTCCAATGGTAATATGGAAATGTGCTTTCTCATTCATACAGCTCCTGGGAATTATTGCAGTCATGTCCCAAGTCGTATGGCAGGTTTTCATTGTTTTTGTCCCCATGATTGCAACTTGCATCTGGTATCAGCGATATTATATATCATCAGCCCGAGAACTGGCAAGATTGGTCGGAGTATGCAAAGCTCCAGTAATACAGCATTTTTCTGAAACCATCTCAGGATCCACAACCATCAGGAGCTTTGATCAAGAGTCAAGATTCAGGGACACAAACATGAAACTTATAGATGGGTATACCAGGCCCAAGTTCAACAGTGCTGCTGCAATGGAGTGGTTGTGCTTCCGCTTGGATGTGCTATCTTCTATTACATTTGCCTTCTCTTTGGTTTTCTTGATCTCTATTCCAGAGGGAGCAATTGATCCTGGCATTGCGGGCTTAGCAGTGACATATGGACTTAATTTAAACACGTTACAAGCTTGGGTGGTATGGAATCTTTGCAATATGGAGAATAAGATTATATCAGTTGAGAGAATGCTTCAATACACTTCCATTCCAAGTGAGCCTCCCCTTGTCATGGAAGGAAACAAGCCAGCATGTTCTTGGCCTTCACATGGAGAAGTTGATATTCGTGATTTGCAGGTCCGCTATGCCCCACACCTGCCACTTGTATTGAGAGGTCTCACATGCAATTTCCCAGGAGGGATGAAGACCGGCATAGTAGGCCGAACCGGTAGCGGCAAATCAACCCTCATACAGACCCTCTTTCGAATTGTTGAACCTACCGCTGGTGAAATCATGATAGATGGTACCAACATCTCCTTGATTGGGCTACATGATTTGCGGTCCAGACTAAGCATTATCCCTCAGGATCCAACCATGTTTGAAGGGACTGTACGGAGCAACCTTGACCCACTGGAAGAGTATTCAGATGAACAGATTTGGGAGGCCCTGGATAAGTGTCAGCTTGGTGATGAAGTCAGGAAGAAAGAAGGAAAGCTTGATTCTGCAGTTAATGAGAATGGAGAGAATTGGAGTATGGGTCAGAGGCAGCTGGTTTGTCTCGGACGAGTGCTACTCAAGAAAAGCAAGGTCTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCCACTGATAATCTGATTCAGCAAACCCTTAGACAACACTTTGTTGATTCTACGGTCATAACCATTGCGCATCGAATAACTTCTGTTCTAGATAGTGACATGGTTCTACTTCTAGATCATGGACTTATTGAGGAACATGATACCCCCGCAAGATTGCTAGAGAACAAGTCGTCATCTTTCGCAAAGCTTGTAGCAGAGTACACCGTGAGGTCAAAATCTAACTAG 3810 43.46 MAGLEAMVPYSAGDPFGFSAQNICLGYSLYIVKQHQSQPIQFLVPDAVYVITGLFLCYLGLWGKNQGEESILRESLLHGSASISTRVASNKSKGEETVTPFSNAGVFSLLTFSWMGPLIALGNKKTLDLEDVPQLDAVNSVVGGFPIFRSKLEGDGGGGSGVTTLKLVKAMILSAWAEILLSALFALLYTLASYVGPYLIDTFVQYLNGQRQFKNEGYFLVSAFLVAKLVECLSMRHWFFRLQQVGIRMRAVLVTKIYNKVLAVSYHSKQCHTSGEIINFISVDAERIGDFGWYMHDPWMVTLQVALALLILYKNLGLASIAAFFATVIIMLANVPLAKFQEKFQDKLMESKDKRMKSTSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYPDVVEKLPKGTSSTAIEIVNGNFSWDLSSPHPTLKDINLQVHHGMRVAVCGAVGSGKSSLLSCILGEVPKISGTLKLSGTKAYVAQSPWIQGGKIEENILFGKEMDRERYERVLDACTLKKDLEILPFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGTHLFKECLLGLLDSKTVVYVTHQVEFLPAADLILVMKEGRITQAGKYNDILNYGSDFVELVGAHKKALSALESIEAEKSSIMSENKENRNGQTGNIEGTDGPKAQLVQEEEREKGKVGFSVYWKYITTAYGGALVPFILLSQILFQLLQIGSNYWMAWATPVSEDVKPAVGGSTLILVYVALAIGSSLCVLSRAMLVVTAGYRTATILFNKMHLSIFRAPMSFFDATPSGRILNRASTDQSAVDMDIPMVIWKCAFSFIQLLGIIAVMSQVVWQVFIVFVPMIATCIWYQRYYISSARELARLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLIDGYTRPKFNSAAAMEWLCFRLDVLSSITFAFSLVFLISIPEGAIDPGIAGLAVTYGLNLNTLQAWVVWNLCNMENKIISVERMLQYTSIPSEPPLVMEGNKPACSWPSHGEVDIRDLQVRYAPHLPLVLRGLTCNFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIMIDGTNISLIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSAVNENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAHRITSVLDSDMVLLLDHGLIEEHDTPARLLENKSSSFAKLVAEYTVRSKSN* 1270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7910838 7917664 - Vvi19g625 Vvi19g625 782124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g625 1269 CDD ABCC_MRP_domain2 1024 1244 - -
Vvi19g625 1269 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 405 1268 - -
Vvi19g625 1269 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 24 396 - -
Vvi19g625 1269 MobiDBLite consensus disorder prediction 653 675 - -
Vvi19g625 1269 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 24 396 - -
Vvi19g625 1269 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 405 1268 - -
Vvi19g625 1269 Gene3D ABC transporter type 1, transmembrane domain 160 394 IPR036640 GO:0005524|GO:0016021
Vvi19g625 1269 Gene3D ABC transporter type 1, transmembrane domain 671 1007 IPR036640 GO:0005524|GO:0016021
Vvi19g625 1269 SMART AAA_5 1052 1237 IPR003593 -
Vvi19g625 1269 SMART AAA_5 439 612 IPR003593 -
Vvi19g625 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 412 635 IPR003439 GO:0005524
Vvi19g625 1269 Gene3D - 1010 1262 IPR027417 -
Vvi19g625 1269 MobiDBLite consensus disorder prediction 657 671 - -
Vvi19g625 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 634 IPR027417 -
Vvi19g625 1269 CDD ABC_6TM_ABCC_D2 707 1001 IPR044726 GO:0140359
Vvi19g625 1269 ProSitePatterns ABC transporters family signature. 537 551 IPR017871 GO:0005524
Vvi19g625 1269 SUPERFAMILY ABC transporter transmembrane region 707 1007 IPR036640 GO:0005524|GO:0016021
Vvi19g625 1269 CDD ABCC_MRP_domain1 412 612 - -
Vvi19g625 1269 Pfam ABC transporter transmembrane region 180 389 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g625 1269 Pfam ABC transporter transmembrane region 709 952 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g625 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 180 396 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g625 1269 SUPERFAMILY ABC transporter transmembrane region 172 388 IPR036640 GO:0005524|GO:0016021
Vvi19g625 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1016 1256 IPR027417 -
Vvi19g625 1269 CDD ABC_6TM_ABCC_D1 181 396 IPR044746 GO:0140359
Vvi19g625 1269 Pfam ABC transporter 1044 1191 IPR003439 GO:0005524
Vvi19g625 1269 Pfam ABC transporter 430 564 IPR003439 GO:0005524
Vvi19g625 1269 Gene3D - 395 661 IPR027417 -
Vvi19g625 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1028 1260 IPR003439 GO:0005524
Vvi19g625 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 709 989 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g625 - - K05666 vvi:100252075 1698.72
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g625 . Blo03g01469 . Bda09g00417 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g01855 . . Cme06g02771 . . . . . . Bma07g01268 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59