Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g626 ATGGAGATAAAAAAAAAACATGGGAAAATTGTCTCTATGTCCTTGAAGTTGTCTCTCTCTTCATGCCTGCCTAGCTTCTTTGCCATGTCCGTCAACATTCGATGGCTGCCAAGTTATCCGGCGCCCATGGAAAGAATCAACGGGGGTGCTCTTGAAAATTATAAGAGGACTAGGTTTTTGTACTATAAGCAAACGTTTGCATGCTGTCAGGGTCTGTCACTGTTGAATTTCTTCTTGTACCAGTCCCTACAAGTTCAATTTTTGGTGCCCGACATTGTCTACGTCATAACTGGTCTGTTCTTGTGCTATTCCGGCCTTCTTACTTTCTCTTGGATCGGTCCCTTGATTGCTGAGGGTAACAAGAAAACATTAGACCTTGGGGATCTGGTGAAAGCATTGATCTTTGCATTTTGGGCAGAAATCCTATTGACGGCTTTATTCCTACTTTTGGACATTTTAGCTTCTTATGTTGGGCCCTATCTTATTGACACCTTCGTTCAATATCTCAATGGGCGGAGGGAATTCAAAAATGAAGGCTATGTTTTGGTTATGGTCTTTTTTCTTGCGAAGCTTGTTGAGTGCCTTTCACTGAGGCAGTGTTCCTTTAGATTGCAGCAGGTTGGTTTTAGGATCAGAGCAGTAATGATCACAATGATCTACAACAAGGGTTTGACTCTTTCCTGCCAGTCAAAGCAGGGCCATACTACTGGGGAGATCATTAATTTTATGTCTGTTGATGCGGAGAGAATTGGGGATTTCATTTGGTATATGCATGGACCATGGATGGTTATTGTGCAAGTTACTTTAGCCTTGCTAATCTTGTATAAAAACGTCGGCCTTGCTTCAGTTGCAGCTTTCTTTGCAACTATAATTGTTATGTTGGCAAATGTTCCACTGGGGAAATGGGAAGAGAAGTTTCAGGGCAAGTTAATGGAATCAAAAGATAAAAGGATGAAGGCAACATCTGAGATTTTAAGAAACATGAGGATTCTCAAGCTTCAGGGATGGGAGATGAAGTTTTTGTCTAAAATTGTAGACCTTCGGAAGAATGAGACGGGGTGGTTGAAAAAATATCTTTACACTTCAGCCATGACCACTTTTTTTTTCTGGGTTGCCCCAACATTTGTGTCCGTGGTCACCTTTGGAACTTGCATGCTTATAGGAATCCCGCTTGAATCAGGGAAGATCTTATCTTCACTTGCAACATTCAGGATACTTCAACAACCCATCTACCTTCTTCCTGACCTAATCTCAATGATAGTTCAGACTAAAGTATCCCTTGACAGAATTACATCCTTTCTTCGTCTAGTTGACCTGCAGAGTGATGTTATCGAGAGGCTTCCAAAAGGTAGTTCTGATACAGCAATTGAGATAGTGGATGGGAATTTCTCTTGGGATTTATCTTCCCCTAATCCAACACTGAAGGATATTAATTTGCGGGTGTGCCGTGGCATGAGGGTTGCTGTTTGTGGTACTGTAGGCTCAGGCAAGTCAAGCTTACTCTCCTGTATGTTGGGAGAGGTGCCTAAGATATCTGGTATCCTTAAGCTGTGTGGAACAAAGGCATATGTTGCTCAGTCTCCTTGGATACAGAGTGGCAAGATAGAAGAGAACATCTTGTTTGGTAAGGAGATGGACAGAGAAAGGTATGAAAGGGTCCTTGATGCATGTTCCTTGAAGAAGGACCTGGAGGTTCTCTCATTTGCTATCCTTGTATGTTTAAATATGCACTGCTATGGGCTATATGAGATTTGGTTCTTGGAATGTTTGCTGGGTCTCTTGGGTTCGAAAACTGTGATCTATGTTACACATCAAGTAGAGTTCTTACCTGCTGCTGATCTCATACTGGTCATGAAAGATGGAAGAATTACACAAGCTGGAAAGTACAATGAAATTCTCAACTCTGGAACTGATTTTATGGAACTTGTTGGTGCACATAAGAAAGCTTTGTCAGCACTCAATTCTGTAGAGACAGGGTCACTTTCAGAAAAATTAAAAGAAAACAGCGGTGGCCAAAATGGTAAAGCAGAGGAGATAGATGGGCCAAAAGGTCAGCTTGTTCAAGAAGAGGAGAGAGAGAAAGGTAAAGTTGGGCTATGGGTTTATTGGAATTACATGAGGACAGCATATGGAGGGGCTCTTGTGCCCTTTATACTGTTGTCACAGATTCTCTTTCAGCTGCTTCAAATTGGAAGCAATTATTGGATGGCTTGGGCAAGTCCCGTGTCAGATGATGTGAAACCTGCAGTTAGAGGTTCTACTCTCATAATTGTTTATGTAGCTTTGGCTGTTGGAAGTTCCTTTTGCGTCCTTTCTAGAGCCATGCTTCTTGTAACAGCCGGTTACAAGACAGCTACTATACTCTTCAATAAAATGCATTTGTGCGTCTTCCGTGCCCCAATGTCATTCTTTGATGCCACCCCAAGTGGACGGATTCTAAACAGAGCTTCTACAGACCAAAGTACGATTGATACAAACATTGCAACGCAAGTTGGGGCATGTGCCTTCCAATTGATTCAGCTCCTGGGAATTATTGCAGTAATGTCACAGGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTGTGGCTGCAACCTGCATCTGGTATCAGCAATATTACATACCTTCAGCACGAGAACTATCAAGATTGGCCGGAGTATGCAAAGCTCCAATAATACAACATTTTTCCGAAACTATATCAGGATCTATGACCATCAGGAGCTTTGATCAAGAATCTAGATTCAGGGACACAAACATGAAATTGATAGATGGGTATATACGGCCCAAGTTTAGCATTGCTGGTGCAATAGAATGGCTGTGCTTCCGCTTGGATATGCTATCTTCTGTTACATTTGCCTTCTCTTTGGTTTTCTTAATCTCTGTTCCAGAGGGAGTAATTGATCCTGGTCTTGCAGGCCTAACAGTGACATATGGACTTAATTTGAACATGATACTAGCTTGGGTAATATGGAATTTTTGCAATATGGAGAATATAATTATATCAGTTGAGAGAATACTTCAATACACTTCCATTCCAAGTGAGCCGCCTCTTGTCATAGAAGAAAACAGGCCAGCATGTTCTTGGCCTTCACATGGACAAGTTGATATTCAGGATTTGCAGGTCCGCTATGCCCCACACATGCCACTTGTATTGAGAGGTCTCACATGCACTTTCCTGGGAGGAATGAAGACTGGCATTGTAGGGAGAACTGGCAGTGGTAAATCAACCCTCATACAGACCCTCTTTCGAATTGTTGAACCTGCCGCTGGTCAGATTACGATAGATGGTACCAACATCTCTTCCATTGGACTACATGATTTGCGGTCCAGACTAAGCATTATCCCTCAGGATCCAACCATGTTTGAAGGGACTGTACGGAGCAACCTTGACCCACTTGAAGAGTACTCAGATGAACAGATTTGGGAGGCTCTGGATAAGTGCCAGCTTGGAGATGAAGTCAGGAAGAAAGAAGGAAAGCTAGATTCTGCAGTTACTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAGCTGGTTTGTCTTGGCCGAGTGCTACTCAAGAAAAGCAAGGTCTTGGTGCTTGATGAAGCTACCGCATCAGTTGATACAGCCACTGATAATCTGATTCAGCAAACCCTTAGACAACACTTTGTCGACTCTACAGTCATAACCATTGCACATCGAATTACTTCTGTCCTCGATAGTGACATGGTTCTACTTCTGGATCATGGGCTTGTTGAGGAATATGATACCCCCACCAGATTGCTAGAGAACAAGTCGTCGTCTTTTGCAAAGCTTGTAGCAGAGTACACTGTGAGGTCAAATTCTAGTCTTGAAAACGTGGCTGATACCTGA 3855 42.67 MEIKKKHGKIVSMSLKLSLSSCLPSFFAMSVNIRWLPSYPAPMERINGGALENYKRTRFLYYKQTFACCQGLSLLNFFLYQSLQVQFLVPDIVYVITGLFLCYSGLLTFSWIGPLIAEGNKKTLDLGDLVKALIFAFWAEILLTALFLLLDILASYVGPYLIDTFVQYLNGRREFKNEGYVLVMVFFLAKLVECLSLRQCSFRLQQVGFRIRAVMITMIYNKGLTLSCQSKQGHTTGEIINFMSVDAERIGDFIWYMHGPWMVIVQVTLALLILYKNVGLASVAAFFATIIVMLANVPLGKWEEKFQGKLMESKDKRMKATSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAMTTFFFWVAPTFVSVVTFGTCMLIGIPLESGKILSSLATFRILQQPIYLLPDLISMIVQTKVSLDRITSFLRLVDLQSDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSLLSCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLDACSLKKDLEVLSFAILVCLNMHCYGLYEIWFLECLLGLLGSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYNEILNSGTDFMELVGAHKKALSALNSVETGSLSEKLKENSGGQNGKAEEIDGPKGQLVQEEEREKGKVGLWVYWNYMRTAYGGALVPFILLSQILFQLLQIGSNYWMAWASPVSDDVKPAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATILFNKMHLCVFRAPMSFFDATPSGRILNRASTDQSTIDTNIATQVGACAFQLIQLLGIIAVMSQVAWQVFIVFIPVAATCIWYQQYYIPSARELSRLAGVCKAPIIQHFSETISGSMTIRSFDQESRFRDTNMKLIDGYIRPKFSIAGAIEWLCFRLDMLSSVTFAFSLVFLISVPEGVIDPGLAGLTVTYGLNLNMILAWVIWNFCNMENIIISVERILQYTSIPSEPPLVIEENRPACSWPSHGQVDIQDLQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQITIDGTNISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSAVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAHRITSVLDSDMVLLLDHGLVEEYDTPTRLLENKSSSFAKLVAEYTVRSNSSLENVADT* 1285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7925930 7935919 - Vvi19g626 Vvi19g626 782125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g626 1284 Pfam ABC transporter 1052 1199 IPR003439 GO:0005524
Vvi19g626 1284 Pfam ABC transporter 474 524 IPR003439 GO:0005524
Vvi19g626 1284 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1034 1268 IPR003439 GO:0005524
Vvi19g626 1284 Pfam ABC transporter transmembrane region 719 959 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g626 1284 Pfam ABC transporter transmembrane region 142 409 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g626 1284 SUPERFAMILY ABC transporter transmembrane region 132 434 IPR036640 GO:0005524|GO:0016021
Vvi19g626 1284 CDD ABCC_MRP_domain2 1032 1252 - -
Vvi19g626 1284 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 717 997 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g626 1284 Gene3D - 1017 1270 IPR027417 -
Vvi19g626 1284 CDD ABC_6TM_ABCC_D2 715 1009 IPR044726 GO:0140359
Vvi19g626 1284 Gene3D - 581 646 IPR027417 -
Vvi19g626 1284 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 422 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g626 1284 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 585 1280 - -
Vvi19g626 1284 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 128 569 - -
Vvi19g626 1284 SUPERFAMILY ABC transporter transmembrane region 715 1015 IPR036640 GO:0005524|GO:0016021
Vvi19g626 1284 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 128 569 - -
Vvi19g626 1284 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 585 1280 - -
Vvi19g626 1284 MobiDBLite consensus disorder prediction 661 687 - -
Vvi19g626 1284 Gene3D ABC transporter type 1, transmembrane domain 117 438 IPR036640 GO:0005524|GO:0016021
Vvi19g626 1284 Gene3D ABC transporter type 1, transmembrane domain 679 1015 IPR036640 GO:0005524|GO:0016021
Vvi19g626 1284 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 456 645 IPR003439 GO:0005524
Vvi19g626 1284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1024 1264 IPR027417 -
Vvi19g626 1284 CDD ABC_6TM_ABCC_D1 152 430 IPR044746 GO:0140359
Vvi19g626 1284 Gene3D - 439 573 IPR027417 -
Vvi19g626 1284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 644 IPR027417 -
Vvi19g626 1284 SMART AAA_5 483 622 IPR003593 -
Vvi19g626 1284 SMART AAA_5 1060 1251 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g626 - - K05666 vvi:100254999 2081.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g626 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0021 Cone9ag0020 . . Lsi02g01854 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59