Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g627 ATGGTGGGATTCGAAGCCATGAGAATCAAGGGGGGTGCTCCTGAAAATTGTAAGAGGACTAGGTTTTTAAATGGCTGGTCTGATGAAAGGCTGGTGACCCTTTTGGATTTAATTGCTCAGTCTCCTTGGATACAGAGTGGCAAGATAGAAGAGAACATCTTGTTTGGTAAGGAGATGGAAAGAGAAAGGTATGAAAGGGTCCTTGATGCATGTTCCTTAAAGAAGGACCTGGAGGTTCTCTCATTTGGTGATCAGACAGTAATAGGTGAGTGGGGAATCAATATGAGTGGTGGCCAGAAGCAAAGAATACAGATTGCACGTGCGCTCTACCAAAATGCTGATATTTATCTGTTTGATGACCCCTTCAGTGCCGTGGATGCTCATACAGGAACCCATCTCTTTAAGGAATGTTTGCTGGGTCTCTTGGGTTCGAAAACAGTGATTTATGTTACACATCAAGTAGAGTTCTTACCTGCTGCTGATCTCATACTGGTCATGAAAGATGGAAGGGTTACACAAGCAGGAAAGTACAATGAAATTCTCAACTCTGGAACTGATTTTATGGAACTTGTTGGTGCACATAAGAAAGCTTTGTTAGCACTCAATTCTGTAGAGGCAGGGTCACTTTCAGAAAAATTAAAAGAAAACAGAGGTGGCCAAAATGGTAAAGCAGAGGAGATAGATGGGACAAAAGGTCAGCTTGTTCAAGAAGAGGAGAGAGAGAAAGGTAAAGTTGGGCTATGGGTTTATTGGAAATACATCAGGACAGCATATGGAGGAGCTCTTGTGCCCTTTATATTGTTGTCACAGATTCTCTTTCAGCTGCTTCAGATTGGAAGCAATTATTGGATGGCTTGGGCAAGTCCCGTGTCAGATGATGTGAAACCTGCAGTTAGAGGTTCTACTCTCATAATTGTTTATGTAGCTTTGGCCGTTGGAAGTTCTTTTTGCGTCCTTTCCAGAGCCATGCTTCTTGTAACAGCTGGTTACAAGACAGCTACTATACTCTTCAATAAAATGCATTTGTGCGTCTTCCGTGCCCCAATGTCATTCTTTGATGCCACCCCAAGTGGGCGAATTCTAAACAGAGCTTCTACAGACCAAAGTACGATCGATACAACCATGCCAATGCAAGTTGGGGCATTTGCCTTCCAATTGATTCAGCTCCTGGGAATTATTGCAGTTATGTCACAGGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTGTGATTGCAACCTGCATCTGGTATCAGCAATATTACATACCTTCAGCACGAGAACTGTCAAGATTGGCCGGAGTATGCAAAGCTCCAGTAATTCAACATTTTTCTGAAACTATAGCAGGATCTATGACCATCAGAAGCTTTGATCAAGAATCTAGATTCAGGGATACAAACATGAAATTGGTAGATGGGTATATACGGCCCAAGTTCAACATTGCTGGTGCAATGGAATGGCTGTGCTTCCGCTTGGATATGCTATCTTCTGCTACATTTGCCTTCTCTTTGGTTTTCTTAATCTCTGTTCCAGAGGGAGTAATTGATCCTGGTATTGCAGGCCTAGCAGTGACATATGGACTTAATTTGAACATGATACAAGCTTGGGTAATATGGAATCTTTGCAATATGGAGAATAAAATTATATCAGTTGAGAGAATACTTCAATACACTTCCATTCCAAGCGAGCCTCCTCTTGTCACAGAAGAAAACAGGCTAGCATGTTCTTGGCCTTCACATGGAGAAGTTGATATTCAGGATTTGCAGGTCCGCTATGCCCCACACATGCCACTTGTATTGAGAGGTCTCACATGCACTTTCCTGGGAGGAATGAAGACTGGCATTGTAGGGCGAACTGGCAGTGGTAAATCAACCCTCATACAGACCCTCTTTCGAATTGTTGAACCTGCCGCTGGTCAGATTATGATAGATGGTACCAACATCTCTTCTATTGGACTACATGATTTGCGGTCTAGACTAAGCATTATCCCTCAGGATCCAACCATGTTTGAAGGGACTGTACGGAGCAACCTTGACCCACTTGAAGAGTACTCAGATGAACAGATTTGGGAGGCTCTGGATAAGTGCCAGCTTGGAGATGAAGTCAGGAAGAAAGAAGGAAAGCTAGATTCTGCAGTTATTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAACTGGTTTGTCTTGGCCGAGTTCTACTGAAGAAAAGCAAGGTCTTAGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCCACGGATAATCTGATTCAGCAAACCCTTAGACAACACTTTGTCGATTCCACAGTCATAACCATTGCACATCGAATTACTTCTGTTCTTGATAGTGACAAGGTTCTACTTCTGGATCATGGGCTTATTGAGGAATACGATACCCCCACCAGATTGCTAGAGAACAAGTCGTCATCTTTTGCAAAGCTTGTAGCAGAGTACACTGTGAGGTCACATTCTAATCTTGAAAATGCGGGTGATATCTGA 2499 43.06 MVGFEAMRIKGGAPENCKRTRFLNGWSDERLVTLLDLIAQSPWIQSGKIEENILFGKEMERERYERVLDACSLKKDLEVLSFGDQTVIGEWGINMSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHLFKECLLGLLGSKTVIYVTHQVEFLPAADLILVMKDGRVTQAGKYNEILNSGTDFMELVGAHKKALLALNSVEAGSLSEKLKENRGGQNGKAEEIDGTKGQLVQEEEREKGKVGLWVYWKYIRTAYGGALVPFILLSQILFQLLQIGSNYWMAWASPVSDDVKPAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATILFNKMHLCVFRAPMSFFDATPSGRILNRASTDQSTIDTTMPMQVGAFAFQLIQLLGIIAVMSQVAWQVFIVFIPVIATCIWYQQYYIPSARELSRLAGVCKAPVIQHFSETIAGSMTIRSFDQESRFRDTNMKLVDGYIRPKFNIAGAMEWLCFRLDMLSSATFAFSLVFLISVPEGVIDPGIAGLAVTYGLNLNMIQAWVIWNLCNMENKIISVERILQYTSIPSEPPLVTEENRLACSWPSHGEVDIQDLQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIMIDGTNISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSAVIENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAHRITSVLDSDKVLLLDHGLIEEYDTPTRLLENKSSSFAKLVAEYTVRSHSNLENAGDI* 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7936172 7941661 - Vvi19g627 Vvi19g627 782126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g627 832 Pfam ABC transporter 36 122 IPR003439 GO:0005524
Vvi19g627 832 Pfam ABC transporter 600 747 IPR003439 GO:0005524
Vvi19g627 832 CDD ABCC_MRP_domain1 39 170 - -
Vvi19g627 832 Gene3D - 9 206 IPR027417 -
Vvi19g627 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 812 IPR027417 -
Vvi19g627 832 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 265 545 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g627 832 SMART AAA_5 608 793 IPR003593 -
Vvi19g627 832 SMART AAA_5 27 170 IPR003593 -
Vvi19g627 832 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 38 827 - -
Vvi19g627 832 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 38 827 - -
Vvi19g627 832 CDD ABC_6TM_ABCC_D2 263 557 IPR044726 GO:0140359
Vvi19g627 832 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 582 816 IPR003439 GO:0005524
Vvi19g627 832 CDD ABCC_MRP_domain2 580 800 - -
Vvi19g627 832 Gene3D ABC transporter type 1, transmembrane domain 227 563 IPR036640 GO:0005524|GO:0016021
Vvi19g627 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 192 IPR027417 -
Vvi19g627 832 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 2 193 IPR003439 GO:0005524
Vvi19g627 832 Gene3D - 565 818 IPR027417 -
Vvi19g627 832 Pfam ABC transporter transmembrane region 267 507 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g627 832 ProSitePatterns ABC transporters family signature. 95 109 IPR017871 GO:0005524
Vvi19g627 832 SUPERFAMILY ABC transporter transmembrane region 261 563 IPR036640 GO:0005524|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g627 - - K05666 vvi:100254999 1518.44
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g627 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59