Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g629 ATGGGGTTTAAAACCCTTAATCTAAATCCATTATATGAGATCAAATTACAGAGATTTATCAAAATTGTCTCTATGTCTTTAAAGTTGTCTCTCTCTTCGTGCCTGCCTAGCTTCTTTGCCATGTCCACATTGTTAAGAAAGACCAGTCCCTACAAGTTCAATTTTTGTATAAGTATAGTAGAGTCTGATGAATCCAAGGGGGAAGAAACTGTGACCCCCTTTTCAAAAGCTGGTTTTTTTAGCCTTCTTACTTTCTCTTGGATCGGTCCCTTGATTGCTGAGGGTAACAAGAAAACATTAGACCTTGGGGATGTTCCTCAGCTTGATACCAGCAACAGCGTTGTAGCGGTCTTTCCAGCATTTAGAAATAAGCTCCAGTGTGATTGTGGTGGAAGTAATGGAGTGACCACGCTTAAGCTTGTGAAAGCATTGATCTTTGCATTTTGGGCAGAAATCCTATTGACGGCTTTATTCCTACTTCTGGACATATTAGCTTCTTATGTTGGGCCCTATCTTATTGACACCTTCCAGGTTGGTTTTAGGATCAGAGCAGTAATGATCACAATGATCTACAACAAGGGTTTGACTCTTTCCTGCCAGTCAAAGCAGGGCCATACTACTGGGGAGATCATTAATTTTATGTCTGTTGATGCGGAGAGAATTGGGGATTTCATTTGGTATATGCATGGACCATGGATGGTGATTGTGCAAGTTACTCTAGCCTTGCTAATCTTGTATAAAAACGTCGGCCTTGCTTCAGTTGCAGCTTTCTTTGCAACTATAATTGTTATGTTGGCAAATGTTCCACTGGGGAAATGGGAAGAGAAGTTTCAGGGCAAGTTAATGGAATCAAAAGATAAAAGGATGAAGGCAACATCTGAGATTTTAAGAAACATGAGGATTCTCAAGCTTCAGGGATGGGAGATGAAGTTTTTGTCTAAAATTGTAGACCTTCGGAAGAATGAGACGGGGTGGTTGAAAAAATATCTTTACACTTCAGCCATGACCACTTTTTTTTTCTGGGTTGCCCCAACATTTGTGTCCGTGGTCACCTTTGGAACTTGCATGCTTATAGGAATCCCGCTTGAATCAGGGAAGATCTTATCTTCACTTGCAACATTCAGGATACTTCAACAACCCATCTACAGTCTTCCTGACCTAATCTCAATGATAGCTCAGACTAAAGTATCCCTTGACAGAATTACATCCTTTCTTCGTCTAGTTGACCTGCAGAGTGATGTTATCGAGAGGCTTCCAAAAGGTAGTTCTGATACAGCAATTGAGATAGTGGATGGGAATTTCTCTTGGGATTTATCTTCCCCTAATCCAACACTGAAGGATATTAATTTGCGGGTGTGCCGTGGCATGAGGGTTGCTGTTTGTGGTACTGTAGGCTCAGGCAAGTCAAGCTTACTCTCCTGTATATTGGGAGAGGTGCCTAAGATATCTGGTATCCTTAAGCTGTGTGGAACAAAGGCCTATGTTGCTCAGTCTCCTTGGATACAGAGTGGCAAGATAGAAGAGAACATCTTGTTTGGTAAGGAGATGGACAGAGAAAGGTATGAAAGGGTCCTTGATGCATGTTCCTTGAAGAAGGACCTGGAGGTTCTCTCATTTGCTATCCTTGTATGTTTAAATATGCACTGCTATGGGCTATATGAGATTTGGTTCTTGGAATGTTTGCTGGGTCTATTGGGTTCGAAAACTGTGATCTATGTTACACATCAAGTAGAGTTCTTACCTGCTGCTGATCTCATACTGGTCATGAAAGATGGAAGAATTACACAAGCTGGAAAGTACAATGAAATTCTCAACTCTGGAACTGATTTTATGGAACTTGTTGGTGCACATAAGAAAGCTTTGTCAGCACTCAATTCTGTAGAGGCAGGGTCACTTTCAGAAAAATCAAAAGAAAACAAAGGTGGCCAAAATGGTAAAGCAGAGGAGATAGATGGACCAAAAGGTCAGCTTGTTCAAGAAGAGGAGAGAGAGAAAGGTAAAGTTGGGCTATGGGTTTATTGGAAATACATCAGGACAGCATATGGAGGAGCTCTTGTGCCCTTTATATTGTTGTCACAGATTCTCTTTCAGCTGCTTCAGATTGGAAGCAATTATTGGATGGCTTGGTCAAGTCCCGTGTCAGATGATGTGAAACCTGCAGTTAGAGCTACTATACTCTTCAATAAAATGCATTTGAGCCTTTTCCGTGCCCCAATGTCATTCTTTGATGCCACCCCAAGTGGACGGATTCTAAACAGAGCTTCTACAGACCAAAATGCGATCGACACAAACATTCCCATGCAAGTTGGGGCATTTGCCTTCTCATTGATTCGGCTCCGGGGAATTATTGCAGTTATGTCACAGGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTGTGATTGCAACCTGCATCTGGTATCAGATTAGATTATCAATCATATCTGTTCCTGAAAATGCCAGTAGGTTCAAAACCATTTTTGCCGGGGCTCAATCACAAGCATTGCATATTGAGGAGGTGCCAATTTGTATGTACCATGTCAATTACTATGGCCTCAAAATGAAAGTTTCTTTACTGTTGATATGGTGTTTAGGAGGAATGAAGACTGGCATTTCAGATGAGCAGATTTGGGAGGCTCTGGATAAGTGCCAGCTTGGAGATGAAGTCAGGAAGAAAGAAGGAAAGCTAGATTCTACAGTTATTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAACTGGTTTGTCTTGGCCGAGTTCTACTCAAGAAAAGCAAGGTCTTGGTGCCTGATGAAGCTACTGCATCAGTTGATACAGCCACAGAAAATCTGATTCAGCAAACCCTTAGACAACACTTTGTCGATTCTACAGTCATAACTATTGCACATCGAACTACTTCTGTTCTTGATAGTGACAGGGTTCTACTTCTGGATCATGGGCTAATTGAGGAATACGATACCCCAACGAGATTGCTAGAGAACAAGTCGTCATCTTTCGCCAAGCTTGTAGCAGAGTACACTGTGAGGTTAAATTCTAGTCTTGAAAATGCGGGTGATATCTGA 3063 41.72 MGFKTLNLNPLYEIKLQRFIKIVSMSLKLSLSSCLPSFFAMSTLLRKTSPYKFNFCISIVESDESKGEETVTPFSKAGFFSLLTFSWIGPLIAEGNKKTLDLGDVPQLDTSNSVVAVFPAFRNKLQCDCGGSNGVTTLKLVKALIFAFWAEILLTALFLLLDILASYVGPYLIDTFQVGFRIRAVMITMIYNKGLTLSCQSKQGHTTGEIINFMSVDAERIGDFIWYMHGPWMVIVQVTLALLILYKNVGLASVAAFFATIIVMLANVPLGKWEEKFQGKLMESKDKRMKATSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAMTTFFFWVAPTFVSVVTFGTCMLIGIPLESGKILSSLATFRILQQPIYSLPDLISMIAQTKVSLDRITSFLRLVDLQSDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSLLSCILGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLDACSLKKDLEVLSFAILVCLNMHCYGLYEIWFLECLLGLLGSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYNEILNSGTDFMELVGAHKKALSALNSVEAGSLSEKSKENKGGQNGKAEEIDGPKGQLVQEEEREKGKVGLWVYWKYIRTAYGGALVPFILLSQILFQLLQIGSNYWMAWSSPVSDDVKPAVRATILFNKMHLSLFRAPMSFFDATPSGRILNRASTDQNAIDTNIPMQVGAFAFSLIRLRGIIAVMSQVAWQVFIVFIPVIATCIWYQIRLSIISVPENASRFKTIFAGAQSQALHIEEVPICMYHVNYYGLKMKVSLLLIWCLGGMKTGISDEQIWEALDKCQLGDEVRKKEGKLDSTVIENGENWSMGQRQLVCLGRVLLKKSKVLVPDEATASVDTATENLIQQTLRQHFVDSTVITIAHRTTSVLDSDRVLLLDHGLIEEYDTPTRLLENKSSSFAKLVAEYTVRLNSSLENAGDI* 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7967802 7976826 - Vvi19g629 Vvi19g629 782128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g629 1020 Pfam ABC transporter transmembrane region 726 808 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g629 1020 Pfam ABC transporter transmembrane region 153 380 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g629 1020 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 726 812 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g629 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 868 1000 IPR027417 -
Vvi19g629 1020 MobiDBLite consensus disorder prediction 632 658 - -
Vvi19g629 1020 SUPERFAMILY ABC transporter transmembrane region 144 405 IPR036640 GO:0005524|GO:0016021
Vvi19g629 1020 CDD ABC_6TM_ABCC_D1 175 401 IPR044746 GO:0140359
Vvi19g629 1020 Gene3D - 860 1006 IPR027417 -
Vvi19g629 1020 Gene3D - 552 617 IPR027417 -
Vvi19g629 1020 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 427 1004 IPR003439 GO:0005524
Vvi19g629 1020 Gene3D - 410 544 IPR027417 -
Vvi19g629 1020 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 152 393 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g629 1020 Gene3D ABC transporter type 1, transmembrane domain 77 409 IPR036640 GO:0005524|GO:0016021
Vvi19g629 1020 Gene3D ABC transporter type 1, transmembrane domain 650 825 IPR036640 GO:0005524|GO:0016021
Vvi19g629 1020 SUPERFAMILY ABC transporter transmembrane region 724 816 IPR036640 GO:0005524|GO:0016021
Vvi19g629 1020 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 556 721 - -
Vvi19g629 1020 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 723 808 - -
Vvi19g629 1020 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 872 1015 - -
Vvi19g629 1020 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 177 540 - -
Vvi19g629 1020 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 60 176 - -
Vvi19g629 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 615 IPR027417 -
Vvi19g629 1020 MobiDBLite consensus disorder prediction 633 658 - -
Vvi19g629 1020 Pfam ABC transporter 445 495 IPR003439 GO:0005524
Vvi19g629 1020 Pfam ABC transporter 840 935 IPR003439 GO:0005524
Vvi19g629 1020 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 177 540 - -
Vvi19g629 1020 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 60 176 - -
Vvi19g629 1020 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 723 808 - -
Vvi19g629 1020 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 872 1015 - -
Vvi19g629 1020 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 556 721 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g629 - - K05666 vvi:100254999 1269.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024377 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3