Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g630 ATGGTGGGATTCGAAGCCATGGTTACGTATCCTGGTACCGGTTTTCTGCTAAACCCCGTCTTTTTACGTGTATTTTCTGCCTCATTGCATCTAGTTTTGTTGCTTCTCCTGTTTGTATCATGGGTGTGCAAGAGAATCAAGGGGGGTGCTCCTGAAAATTGTAAGAGGACTAGGTTTTTGTACTATAAGCAAACGTTTGCTTGCTGTCAGGGTCTGTCGCTGTTGAATTTGTTGTTGTGTTTTTTGAACTACTTTTATTGGTATAGAAATGGCTGGTCTGATGAAAGGCTGGTGACCCTTTTGGATTTAGTGCTCAGAACACTTGCCTGGGGAGCAGTCTGTGTATATTTGCACACTCAATTCATTGGTTCTGTTGAACCAAAGTTCCCATTTTTGTTAAGAGTTTGGTGGGGATTTTACTTCTCCATCTCATGTTATTTCCTTGTTCTAGATATTGTCAAGAAACACCAGTCCCTACGAATTCAATATTTGGTGCCCGATATTGTCTACGTCATAACTGGTCTGTTCTTGTGCTACTCGGGGTTTTTGGGAAAGAATCAAGGCGAGGAATCGATTCTTAGGGAACCCCTTTTGAATGGTAGTACCAGTATAAACCTTGAGGATGTTCCTCAGCTTGATACCAGCAACAGCGTTGCGGGGGTCTTTCCAGCATTTAGTAATAAGCTCCAGTGTGATAGTGGTGGAAGTAGTGGAGTGACCACGCTTAAGCTGGTGAAAGCATTGATCTTTGCATGCTGGGCAGAAATCCTATTGACGGCTTTCTTGGTACTTGTAAAGACATTAGCATCTTATGTTGGGCCCTATCTTATTGATACCTTCGTTCAATATCTCAATGGGCGGAGGGAATTCAAAAATGAAGGCTATCTTTTGGCTATGGCTTTTTTTGTTGCGAAGCTTGTTGAGCGCCTTTCAGTGAGGCACTGGTTCTTTAGATTGCAGCAGGTTGGAATTAGGATCAGAGCAGTACTGATCACAATGATCTACAACAAGGGTTTGACTCTTTCCTGCCAGTCAAAGCAGGGTCATTCTACTGGGGAGATCATTAATTTTATGTCTGTTGATGCGGAGAGAATTGGGGATTTCAGTTGGTATATGCATGATCCATGGATGGTGATTGTGCAAGTTACTTTAGCCTTGCTAATCTTGTATAAAAACCTGGGCCTTGCTTCAGTTGCAGCTTTCTTTGCAACTGTAATTGTTATGTTGACAAATGTTCCACTAGGGAAATGGCAAGAGAAGTTTCAGGACAAGTTGATGGAATCAAAAGATAAAAGGATGAAGGCAACATCCGAGATCTTAAGAAACATGAGGATTCTCAAGCTTCAGGGATGGGAGATGAAGTTTTTGTCCAAAATTGTAGACCTTCGGAAGAATGAGACAGGGTGGTTGAAAAAATATCTTTACACTTCAGCCGTGACCACTTTTGTTTTCTGGGGAGCCCCAACATTTGTGTCTGTGGCCACCTTTGGAACTTGCATGCTTCTAGGGATCCCGCTTGAATCAGGGAAGATCTTATCTTCACTTGCAACATTCAGGATACTTCAAGAACCCATCTACAGTCTTCCTGACCTAATCTCAATGATAGCTCAGACTAAAGTTTCCCTTGACAGAATTGCATCCTTTCTTCGTCTGGATGACCTGCCGAGTGATCTGTGTGGAACAAAGGCCTATGTTGCTCAGTCTCCTTGGATACAGAGTGGCAAGATAGAAGAGAACATCTTGTTTGGTAAGGAGATGGAAAGAGAAAGGTATGAAAGGGTCCTTGATGCATGTTCCTTAAAGAAGGACCTGGAGGTTCTCTCATTTGGTGATCAGACAGTAATAGGTGAGTGGGGAATCAATATGAGTGGTGGCCAGAAGCAAAGAATACAGATTGCACATTTGGTTCTTGGTCTGGCTGAGGTAATTAGGGACCCTTGCTATGCCATTGCCCTTTGTTTTGAATGTTTGCTGGGTCTCTCGGGTTCGAAAACAGTGATTTATGTTACACATCAAGTAGAGTTCTTACCTGCTGCTGATCTCATACTGGTCATGAAAGATGGAAGGGTTACACAAGCAGGAAAGTACAATGAAATTCTCAACTCTGGAACTGATTTTATGGAACTTGTTGGTGCACATAAGAAAGCTTTGTTAGCACTCAATTCTGTAGAGGCAGGGTCACTTTCAGAAAAATTAATAGTTGAAAAAGAAGAAAACAGAGGTGGCCAAAATGGTAAAGCAGAGGAGATAGATGGACCAAAAGGTCAGCTTGTTCAAGAAGAGGAGAGAGAGAAAGGTAAAGTTGGGCTATGGGTTTATTGGAAATACATCAGGACAGCATATGGAGGAGCTCTTGTGCCCTTTATATTGTTGTCACAGATTCTCTTTCAGCTGCTTCAGATTGGAAGCAATTATTGGATGGCTTGGGCAAGTCCCGTGTCAGATGATGTGAAACCTGCAGTTAGAGGTTCTACTCTCATAATTGTTTATGTAGCTTTGGCTGTTGGAAGTTCTTTTTGCGTCCTTTCCAGAGCCATGCTTCTTGTAACAGCTGGTTACAAGACAGCTACTATACTCTTCAATAAAATGCATTTGTGCGTCTTCCGTGCCCCAATGTCATTCTTTGATGCCACCCCAAGTGGGCGAATTCTAAACAGAGCTTCTGCAGACCAAAGTACGATCGATACAACCATGCCAATGCAAGTTGGGGCATTTGCCTTCCAATTGATTCAGCTCCTGGGAATTATTGCAGTTATGTCACAGGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTGTGATTGCAACCTGCATCTGGTATCAGCAATATTACATACCTTCAGCACGAGAACTGTCAAGATTGGCTGGAGTATGCAAAGCTCCAGTAATTCAACATTTTTCTGAAACTATAGCAGGATCTATGACCATCAGAAGCTTTGATCAAGAATCTAGATTCAGGGATACAAACATGAAATTGGTAGATGGGTATTTACGGCCCAAGTTCAACATTGCTGGTGCAATGGAATGGCTGTGCTTCCGCTTGGATATGCTATCTTCTGTTACATTTGCCTTCTCTTTGGTTTTCTTAATCTCTGTTCCAGAGGGAGTAATTGATCCTGGTATTGCGGGCCTAGCAATGACATATGGACTTAATTTGAACATGATACAAGCTAGGGTAATATGGAATCTTTGCAATATGGAGAATAAAATTATATCAGTTGAGAGAATACTTCAATACACTTCCATTCCAAGCGAGCCTCCTCTTGTCACAGAAGAAAACAGGCTAGCATGTTCTTGGCCTTCACATGGAGAAGTTGATATTCAGGATTTGCAGGTCCGCTATGCCCCACACATGCCACTTGTATTGAGAGGTCTCACATGCACTTTCCTGGGAGGAATGAAGACTGGCATTGTAGGGCGAACTGGCAGTGGTAAATCAACCCTCATACAGACCCTCTTTCGAATTGTTGAACCTGCCGCTGGTCAGATTATGATAGATGGTACCAACATCTCTTCTATTGGACTAAATGATTTGCGGACTAGACTAAGCATTATCCCTCAGGATCCAACCATGTTTGAAGGGACTGTACGGAGCAACCTTGACCCACTTGAAGAGCACTCAGATGAACAGATTTGGGAGGCTCTGGATAAGTGCCAGCTTGGAGATGAAGTCAGGAAGAAAGAAGGAAAGCTAGATTCTGCAGTTATTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAACTGGTTTGTCTTGGCAGAGTTCTACTGAAGAAAAGCAAGGTCTTAGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCCACGGATAATCTGATTCAGCAAACCCTTAGACAACACTTTGTCGATTCCACAGTCATAACCATTGCACATCGAATTACTTCTGTTCTTGATAGTGACAAGGTTCTACTTCTGGATCATGGGCTTATTGAGGAATACGATACCCCCACCAGATTGCTAGAGAACAAGTCGTCATCTTTTGCAAAGCTTGTAGCAGAGTACACTGTGAGGTCACATTCTAATCTTGAAAATGCGGGTGATATCTGA 4068 42.7 MVGFEAMVTYPGTGFLLNPVFLRVFSASLHLVLLLLLFVSWVCKRIKGGAPENCKRTRFLYYKQTFACCQGLSLLNLLLCFLNYFYWYRNGWSDERLVTLLDLVLRTLAWGAVCVYLHTQFIGSVEPKFPFLLRVWWGFYFSISCYFLVLDIVKKHQSLRIQYLVPDIVYVITGLFLCYSGFLGKNQGEESILREPLLNGSTSINLEDVPQLDTSNSVAGVFPAFSNKLQCDSGGSSGVTTLKLVKALIFACWAEILLTAFLVLVKTLASYVGPYLIDTFVQYLNGRREFKNEGYLLAMAFFVAKLVERLSVRHWFFRLQQVGIRIRAVLITMIYNKGLTLSCQSKQGHSTGEIINFMSVDAERIGDFSWYMHDPWMVIVQVTLALLILYKNLGLASVAAFFATVIVMLTNVPLGKWQEKFQDKLMESKDKRMKATSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAVTTFVFWGAPTFVSVATFGTCMLLGIPLESGKILSSLATFRILQEPIYSLPDLISMIAQTKVSLDRIASFLRLDDLPSDLCGTKAYVAQSPWIQSGKIEENILFGKEMERERYERVLDACSLKKDLEVLSFGDQTVIGEWGINMSGGQKQRIQIAHLVLGLAEVIRDPCYAIALCFECLLGLSGSKTVIYVTHQVEFLPAADLILVMKDGRVTQAGKYNEILNSGTDFMELVGAHKKALLALNSVEAGSLSEKLIVEKEENRGGQNGKAEEIDGPKGQLVQEEEREKGKVGLWVYWKYIRTAYGGALVPFILLSQILFQLLQIGSNYWMAWASPVSDDVKPAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATILFNKMHLCVFRAPMSFFDATPSGRILNRASADQSTIDTTMPMQVGAFAFQLIQLLGIIAVMSQVAWQVFIVFIPVIATCIWYQQYYIPSARELSRLAGVCKAPVIQHFSETIAGSMTIRSFDQESRFRDTNMKLVDGYLRPKFNIAGAMEWLCFRLDMLSSVTFAFSLVFLISVPEGVIDPGIAGLAMTYGLNLNMIQARVIWNLCNMENKIISVERILQYTSIPSEPPLVTEENRLACSWPSHGEVDIQDLQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIMIDGTNISSIGLNDLRTRLSIIPQDPTMFEGTVRSNLDPLEEHSDEQIWEALDKCQLGDEVRKKEGKLDSAVIENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAHRITSVLDSDKVLLLDHGLIEEYDTPTRLLENKSSSFAKLVAEYTVRSHSNLENAGDI* 1356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7977106 7983555 - Vvi19g630 Vvi19g630 782129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g630 1355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 711 IPR027417 -
Vvi19g630 1355 SUPERFAMILY ABC transporter transmembrane region 784 1086 IPR036640 GO:0005524|GO:0016021
Vvi19g630 1355 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 474 712 IPR003439 GO:0005524
Vvi19g630 1355 SUPERFAMILY ABC transporter transmembrane region 247 555 IPR036640 GO:0005524|GO:0016021
Vvi19g630 1355 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 558 1350 - -
Vvi19g630 1355 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 85 202 - -
Vvi19g630 1355 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 203 555 - -
Vvi19g630 1355 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 85 202 - -
Vvi19g630 1355 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 203 555 - -
Vvi19g630 1355 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 558 1350 - -
Vvi19g630 1355 SMART AAA_5 1131 1316 IPR003593 -
Vvi19g630 1355 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 257 537 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g630 1355 MobiDBLite consensus disorder prediction 739 760 - -
Vvi19g630 1355 Pfam ABC transporter 1123 1270 IPR003439 GO:0005524
Vvi19g630 1355 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1105 1339 IPR003439 GO:0005524
Vvi19g630 1355 CDD ABCC_MRP_domain2 1103 1323 - -
Vvi19g630 1355 Pfam ABC transporter transmembrane region 257 524 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g630 1355 Pfam ABC transporter transmembrane region 790 1030 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g630 1355 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 788 1068 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g630 1355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1096 1335 IPR027417 -
Vvi19g630 1355 CDD ABC_6TM_ABCC_D2 786 1080 IPR044726 GO:0140359
Vvi19g630 1355 Gene3D - 648 709 IPR027417 -
Vvi19g630 1355 Gene3D - 563 633 IPR027417 -
Vvi19g630 1355 Gene3D ABC transporter type 1, transmembrane domain 750 1086 IPR036640 GO:0005524|GO:0016021
Vvi19g630 1355 Gene3D ABC transporter type 1, transmembrane domain 235 553 IPR036640 GO:0005524|GO:0016021
Vvi19g630 1355 CDD ABC_6TM_ABCC_D1 258 545 IPR044746 GO:0140359
Vvi19g630 1355 Gene3D - 1088 1341 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g630 - - K05666 dzi:111275605 1722.98
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g630 . . . . . . . . . . . Cma09g00988 . . . Cpe06g00799 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59