Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g633 ATGAAGCCTAAACTTGAGAAAGTGCACCAGAAAATTGATAGGATACTTAACAATATTATTGATGACCACAGGAAGAGGAAGACAACAACAAAAGCGGGGCAACCCGAAACCCAGGAAGATCTAGTTGATGTTCTTTTAAACCTTCAGGAGCATGGGGACCTTGGAATTCCCTTAACTGACGGCAACGTCAAAGCAGTCCTATTGGACATTTTCAGTGGTGGTGGTGAGACGTCGTCAACGGCTGTGGTGTGGGCGATGGCAGAAATGCTGAAATCCCCAATAGTAATGGAAAAGGCTCAAGCTGAGGTTAGACGGGTCTTTGATGGAAAAAGGGACATCAATGAAACAGGCATTCATGAATTAAAATACTTGAATTCAGTAGTAAAAGAAACCTTGAGGCTACACCCTTCTGTTCCTTTGTTGCTTCCAAGAGAATGCAGGGAAAGGTGCGTGATTAATGGATACGAGATACCTGAAAACACTAAAGTCATCATTAATGCATGGGCAATTGCTCAAGATCCTGATCATTGGTTTGAACCCAATAAATTTTTTCCTGAGAGGTTCCTGGATAGTTCGATTGATTTCAAGGGTACTGATTTTAAATATATCCCATTTGGTGCTGGAAGGAGGATGTGCCCAGGCATTTTGTTTGCTATACCTAATGTTGAACTGCCACTTGCAAATTTGCTCTACCATTTTGACTGGAAACTTCCGGATGGAATGAAGCATGAGGATCTAGACATGACTGAGGAATTTGGGTTGACCATTAGAAGAAAAGAAGATCTGAACCTAATTCCCATTCCATATGATCCTTTTCTTGTTCTGTGA 828 41.55 MKPKLEKVHQKIDRILNNIIDDHRKRKTTTKAGQPETQEDLVDVLLNLQEHGDLGIPLTDGNVKAVLLDIFSGGGETSSTAVVWAMAEMLKSPIVMEKAQAEVRRVFDGKRDINETGIHELKYLNSVVKETLRLHPSVPLLLPRECRERCVINGYEIPENTKVIINAWAIAQDPDHWFEPNKFFPERFLDSSIDFKGTDFKYIPFGAGRRMCPGILFAIPNVELPLANLLYHFDWKLPDGMKHEDLDMTEEFGLTIRRKEDLNLIPIPYDPFLVL* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8035821 8037817 - Vvi19g633 Vvi19g633 782132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g633 275 Gene3D Cytochrome P450 1 265 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g633 275 PRINTS P450 superfamily signature 73 90 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g633 275 PRINTS P450 superfamily signature 126 137 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g633 275 PRINTS P450 superfamily signature 203 212 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g633 275 PRINTS E-class P450 group I signature 62 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g633 275 PRINTS E-class P450 group I signature 82 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g633 275 PRINTS E-class P450 group I signature 125 143 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g633 275 PRINTS E-class P450 group I signature 166 190 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g633 275 PRINTS E-class P450 group I signature 202 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g633 275 PRINTS E-class P450 group I signature 212 235 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g633 275 PANTHER CYTOCHROME P450 71D10 1 269 - -
Vvi19g633 275 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 205 214 IPR017972 GO:0005506|GO:0016705
Vvi19g633 275 Pfam Cytochrome P450 3 256 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g633 275 SUPERFAMILY Cytochrome P450 4 268 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g633 275 PANTHER CYTOCHROME P450 71B11-RELATED 1 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g633 - - - vri:117908144 556.214
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g633 . . . Bda09g00418 . Bpe08g01101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma07g01265 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015156 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 6 12