Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g634 ATGGTGGCTCCCTTTGTTAGGATTAAATCCTTTAGGTCATACCAGATAAGGATACCCCATGACCGAGCAGAACTCCATGGCACAGTTTCTCCGGAAGAGGTAAGACAAAAGAGATTATCCTCTCTACTGGTCATCTCTTTTCTCCTCATGGAGCTCCAATTCTCCTTCTTCCCTATCCTTTGCACCTTCCTTCTATTCATTTATCTGCTGAAGAGATTAGGAAAGCCATCCAGAACCAACCATCCTGCTCCGAAGTTACCACCAGGACCATGGAAGTTACCCATCATTGGAAACATGCATCAACTTGTTGGTAGTCTACCCCATCGCAGCCTAAGAAGCTTGGCCAAGAAACATGGACCCCTGATGCACCTACAGCTTGGTGAAGTTTCCGCCATTGTTGTTTCTTCAAGGGAGATGGCCAAAGAGGTAATGAAAACCCATGACATCATCTTTTCTCAAAGGCCTTGTATTCTTGCGGCAAGTATCGTATCTTATGATTGCACAGATATTGCTTTTGCCCCATATGGAGTCTCTTTACAGGAGGGAGTATTAATCAATCTCACTAAGAGTATTTTTTCTTTGACATTTAGCATAATTTCCAGGACAGCCTTTGGTAAGAAATGCAAGGACCAAGAAGCATTCTCCGTAACTCTTGATAAATTTGCAGACTCAGCAGGGGAGACCTGTGAGGCTGAAGTAGATGATGATTTAGTTGATGTCCTTTTGAAAGTTCAGAAGCAGGGTGACCTTGAATTTCCCTTAACTATGGACAACATCAAAGCAGTTCTCTTGGACCTGTTCGTAGCTGGCACTGAGACATCATCTACAGCTGTGGAATGGGCCATGGCAGAAATGCTGAAAAACCCTAGAGTAATGGCAAAGGCACAAGCCGAGGTGAGAGACATCTTTAGTAGAAAAGGAAATGCTGATGAAACTGTCGTTCGTGAATTAAAATTCTTGAAGTTAGTCATCAAAGAAACTCTGAGACTGCACCCCCCTGTTCCTTTGCCCTCCAATCACTTGACACAATTAAAGGCATCCTCGTCGGGGAAAAAAAACTATAAAATCATTTTCTTGGCTAAAAAATATCTGCATTTACGAATTTCAAAAGTAGGGTACGTAATCCAGTCCTGTGTGTCACCTAATCCAAGCTTCTACTTTGGACCATGGAAGTTGCCCATCATTGGAAACATGCACCAGCTTGTTGGTAGTCTACCCCATCACAGCCTAAGAAACTTGGCCAAGAAACATGGACCCCTGATGCACCTACAACTAGGTGAAGTTTCCGCCATTGTTGTTTCTTCAAGAGAGATGGCCAAAGAGGTAATGAAAACCCATGACATCATCTTTTCTCAAAGGCCTTGTATTCTTGCGGCAAGTATCCGGGTCCAATCATTCAGATCAGTGAGGGAAGAGGAGGTGCTCAATCTTGACCAAGAAGCATTCTCGGTAACTCTTGAGAAATTTGCAGGCTCAGGAGGGGGTTTCACAATTGCTGATGTGTTCCCTTCCATAAAACTACTTCATGTGGTCAATGAAGATTTAGTTGATGTCCTTTTGAAAGTTCAGAAGCAGGGTGACCTTGAATTTCCCTTAACTACAGACAACATCAAAGCGATTCTCTTGGACCTCTTCATAGCTGGCAGTGAGACATCATCTACAGCTGTGGAGTGGGCCATGGCAGAAATGCTGAAAAACCCTGGAGTAATGGCGAAGGCACAAGCCGAGGTGAGAGACATTTTTAGTAGAAAAGGAAATGCTGACGAAACCATGATTCATGAATTAAAATTCTTAAAGTTGGTCATCAAAGAAACTCTGAGACTGCACCCCCCTGTTCCTTTATTAATTCCAAGAGAATCTCGAGAGAGTTGTGAAATTAATGGATATGAGATACCTGTCAAAACTAGAGTCATAATTAATGCATGGGCAGTTGCAAGAGATCCCGAACATTGGAATGATGCAGAGAGCTTCAATCCAGAGAGGTTCCTTGACAGTTCAATTGATTATCAGGGTACTAATTTTGAATACATCCCATTTGGTGCTGGAAGGAGGATGTGCCCAGGAATATTGTTTGGTATGGCCAATGTTGAGATTGCACTTGCACAATTGCTCTACTATTTTGATTGGAAACTTCCAAATGGAACACAGCATGAAGAGTTAGACATGACTGAGGATTTTAGAACCTCACTTAGAAGAAAACTGAATCTGCACTTAATTCCCATTACTTATCAAGATCATCATTCAGTGCGTCCTGTTGCTGTACTGGATTGGAGGAACGCTCAAGAAGAGCCGTGTTGCCGCAGAAATTGGAGCGCACCATTGTCTGCTGCCGGTGTCCACCATGCCGTACCAATTTACTGTCTCAAAGCTCCGAGAGGTATATATCAAACCAATATAAAACTAATTTTTACAAAGATATTTAGTCTTTTTACTAACTTAAAAACTAAGGAATCATGTAATTGGTGGTTTACAAGGAGTATTTTGGGATTTAGACAACAAAAAACTAATGGAAAATATCTCCCAATGTCGGTAGCAAGCTTCGGGAGGCTTCAGGAGCCATTTCGCAGGAGAAAAATGGTGTCTGCGAAATTTCGCAGACACCTAAGAGGGCTGCGAAATATTTTCGCAACACCAAGCTATCTTCACCAGGCTGCAAAGTTGGCTTCCATCTTGAGGTTCCTAGCTTCCCTCTCGTGGCATGGTTCGTGCATCGTCAGAAGGAGAAACACCTTACTATACAAAACGAGCTTGACCATATGCCTTGGATATTGCGCTGGTCTATCCAAGCTTGACCACGTTAAACATACCCAATACGTACATAATTTTCTGTGGTCCCTGCCATGGAAGATCCTAACATTGGCAACTTGTACCAGTTTGTTGTTGGTTTTCTTCATGGAGCTTCACTTTCCTTCCTTCCATATCCTCTCCGCCTTCATCTTGTTTCTGGTCGTGGTACTGAGAACACAGAAGAGATCCAAAACCGGTAGTTTGACGCCAAATCTACCACCTGGGCCATGGAAGCTTCCACTTGTAGGAAACATTCACCAGCTTGTTGGCTCCCTACCTCACCACGCCCTGAGGGACTTGGCTAAGAAATATGAGGTAATGAAATCTCATGACATCATCTTTGCACAGAGGCCCCACATTCTGGCCACAAGGATCATGTCCTATAATTCTACCAACATTGCCTTTGCGCCATATGGTGACTATTGGAGACATTTGCGAAAAATTTGCATGTCCGAGCTTTTGAGTGCAAATCGTGTTCAATCTTTCCAGTCAATCCGGAACGAAGAGGAATCAAATCTTGTTAGATCAATCTCCTTGAACACAGGGAAACATTCATCTCGGTTCTCCTGGAAACTATTAAGTTGGCAGGAGGCTTCAACGTGGATCGACAAGGATGGACCAGATGAAGATCTGGTAGATGTTCTTTTAAAGTTTCATGAGGATCATGGTGACCATGCATTTTCCTTAACTACTGACAACATCAAAGCAGTTCTCTTGGACATTTTTGGTGCTGGAAGTGAGCCATCATCAACAACTATAGATTTCGCCATGTCAGAAATGATGAGAAACCCCAGAATAATGAGAAAGGCACAAGAAGAGGTGCGGCGGATTTTTGACAGGAAGGAAGAAATCGATGAAATGGGTATTCAAGAATTGAAATTCTTGAAGTTAATACCTGTCAAATCTAAAATCATTGTCAATGCATGGGCAATCGGACGAGATCCCAAACATTGGACTGAACCTGAAAGCTTCAACCCAGAGAGATTCCTTGACAGTTCAATCGATTACAAGGGCACTAACTTCGAGTACATCCCATTCGGTGCTGGAAGGAGGATATGCCCGGGAATCTTGTTTGGCCTTGCCAGTGTTGAGCTTCTACTTGCAAAGTTGCTGTACCATTTCGATTGGAAACTTCCCAACGGAATGAAGCAACAAGATCTAGACATGACTGAGGTTTTTGGCTTGGCTGTTCGAAGAAAAGAAGATCTGTACTTGATTCCCACTGCTTACTATCCTTTATCTCATGAATAA 4038 42.94 MVAPFVRIKSFRSYQIRIPHDRAELHGTVSPEEVRQKRLSSLLVISFLLMELQFSFFPILCTFLLFIYLLKRLGKPSRTNHPAPKLPPGPWKLPIIGNMHQLVGSLPHRSLRSLAKKHGPLMHLQLGEVSAIVVSSREMAKEVMKTHDIIFSQRPCILAASIVSYDCTDIAFAPYGVSLQEGVLINLTKSIFSLTFSIISRTAFGKKCKDQEAFSVTLDKFADSAGETCEAEVDDDLVDVLLKVQKQGDLEFPLTMDNIKAVLLDLFVAGTETSSTAVEWAMAEMLKNPRVMAKAQAEVRDIFSRKGNADETVVRELKFLKLVIKETLRLHPPVPLPSNHLTQLKASSSGKKNYKIIFLAKKYLHLRISKVGYVIQSCVSPNPSFYFGPWKLPIIGNMHQLVGSLPHHSLRNLAKKHGPLMHLQLGEVSAIVVSSREMAKEVMKTHDIIFSQRPCILAASIRVQSFRSVREEEVLNLDQEAFSVTLEKFAGSGGGFTIADVFPSIKLLHVVNEDLVDVLLKVQKQGDLEFPLTTDNIKAILLDLFIAGSETSSTAVEWAMAEMLKNPGVMAKAQAEVRDIFSRKGNADETMIHELKFLKLVIKETLRLHPPVPLLIPRESRESCEINGYEIPVKTRVIINAWAVARDPEHWNDAESFNPERFLDSSIDYQGTNFEYIPFGAGRRMCPGILFGMANVEIALAQLLYYFDWKLPNGTQHEELDMTEDFRTSLRRKLNLHLIPITYQDHHSVRPVAVLDWRNAQEEPCCRRNWSAPLSAAGVHHAVPIYCLKAPRGIYQTNIKLIFTKIFSLFTNLKTKESCNWWFTRSILGFRQQKTNGKYLPMSVASFGRLQEPFRRRKMVSAKFRRHLRGLRNIFATPSYLHQAAKLASILRFLASLSWHGSCIVRRRNTLLYKTSLTICLGYCAGLSKLDHVKHTQYVHNFLWSLPWKILTLATCTSLLLVFFMELHFPSFHILSAFILFLVVVLRTQKRSKTGSLTPNLPPGPWKLPLVGNIHQLVGSLPHHALRDLAKKYEVMKSHDIIFAQRPHILATRIMSYNSTNIAFAPYGDYWRHLRKICMSELLSANRVQSFQSIRNEEESNLVRSISLNTGKHSSRFSWKLLSWQEASTWIDKDGPDEDLVDVLLKFHEDHGDHAFSLTTDNIKAVLLDIFGAGSEPSSTTIDFAMSEMMRNPRIMRKAQEEVRRIFDRKEEIDEMGIQELKFLKLIPVKSKIIVNAWAIGRDPKHWTEPESFNPERFLDSSIDYKGTNFEYIPFGAGRRICPGILFGLASVELLLAKLLYHFDWKLPNGMKQQDLDMTEVFGLAVRRKEDLYLIPTAYYPLSHE* 1346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8052647 8091236 - Vvi19g634 Vvi19g634 782133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g634 1345 SUPERFAMILY Cytochrome P450 87 342 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 PRINTS P450 superfamily signature 269 286 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 PRINTS P450 superfamily signature 600 611 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 PRINTS P450 superfamily signature 677 686 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 PANTHER CYTOCHROME P450 71D10 1227 1339 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71D10 512 743 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71D10 1132 1227 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71D10 384 461 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71D10 1034 1111 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71D10 182 231 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71D10 227 336 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71D10 59 177 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71D10 973 1033 - -
Vvi19g634 1345 SUPERFAMILY Cytochrome P450 388 740 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 1275 1284 IPR017972 GO:0005506|GO:0016705
Vvi19g634 1345 Gene3D Cytochrome P450 1227 1331 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 Pfam Cytochrome P450 1226 1328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 Pfam Cytochrome P450 200 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 Pfam Cytochrome P450 513 724 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 Pfam Cytochrome P450 389 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 Pfam Cytochrome P450 87 155 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 Pfam Cytochrome P450 1133 1225 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 PANTHER CYTOCHROME P450 71B11-RELATED 227 336 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71B11-RELATED 384 461 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71B11-RELATED 182 231 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71B11-RELATED 973 1033 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71B11-RELATED 59 177 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71B11-RELATED 1034 1111 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71B11-RELATED 512 743 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71B11-RELATED 1227 1339 - -
Vvi19g634 1345 PANTHER CYTOCHROME P450 71B11-RELATED 1132 1227 - -
Vvi19g634 1345 Gene3D Cytochrome P450 77 355 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 Gene3D Cytochrome P450 382 737 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 PRINTS E-class P450 group I signature 115 134 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 PRINTS E-class P450 group I signature 139 160 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 PRINTS E-class P450 group I signature 599 617 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 PRINTS E-class P450 group I signature 640 664 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 PRINTS E-class P450 group I signature 676 686 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 PRINTS E-class P450 group I signature 686 709 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 Gene3D Cytochrome P450 1120 1226 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 Coils Coil 1196 1216 - -
Vvi19g634 1345 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 679 688 IPR017972 GO:0005506|GO:0016705
Vvi19g634 1345 Gene3D Cytochrome P450 996 1119 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g634 1345 SUPERFAMILY Cytochrome P450 1002 1337 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g634 - - K23806 vvi:100246293 660.218
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g634 . Blo03g01476 . Bda09g00421 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma07g01256 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015156 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 6 12