Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g636 ATGGCTATCACTTCATCTTCTGCGGCACGATTGCCTCCAATGCTTCCCACATACAATTCCTCCATTTCCCACAAACTCAGACCTTCGTCCCTCTCTCTCCTTTCGAATGCCTCCTTCTCCTCTCTCAAAACCCTTAAACCCTCTCTCTCTTCTTCCAGGGTTTTTGCTGCTCCTGAGCTCTTGAGTTCCCAAGAAACCCCTGATGGCCTTGAAGATTCTGCAACTATTGAGGTTGAGGGTTCTGAAACTCCTGGGGCTTCTGCGCTGAGTATGGGTGTGGATGCGGATAAGATGGCACCGAAGCAGAAAATTAGAATTAAATTGAGGTCTTACTGGGTCCCCCTGATAGAGGACTCATGCAAGCAAATAATGGAAGCTGCGAGAACAACCAACGCAAAGACCATGGGTCCTGTGCCATTACCAACCAAGAAGAAAATTTTTTGTGTACTTAAATCACCACATGTGCATAAGGATGCCAGGTTCCATTTTGAGATCCGAACCCACCAGCGCCTAATCGACATTCTATACCCAACTGCCCAAACTATAGATTCTTTAATGCAGCTTGATCTTCCTGCTGGGGTTGATGTAGAGGTCAAGCTCTGA 603 46.93 MAITSSSAARLPPMLPTYNSSISHKLRPSSLSLLSNASFSSLKTLKPSLSSSRVFAAPELLSSQETPDGLEDSATIEVEGSETPGASALSMGVDADKMAPKQKIRIKLRSYWVPLIEDSCKQIMEAARTTNAKTMGPVPLPTKKKIFCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL* 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8116654 8120740 - Vvi19g636 Vvi19g636 782135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g636 200 Hamap 30S ribosomal protein S10 [rpsJ]. 101 200 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi19g636 200 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 200 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi19g636 200 Pfam Ribosomal protein S10p/S20e 105 199 IPR027486 -
Vvi19g636 200 ProSitePatterns Ribosomal protein S10 signature. 127 142 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi19g636 200 SUPERFAMILY Ribosomal protein S10 103 200 IPR036838 -
Vvi19g636 200 PANTHER BNAC05G40270D PROTEIN 1 200 - -
Vvi19g636 200 TIGRFAM rpsJ_bact: ribosomal protein uS10 102 199 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi19g636 200 SMART Ribosomal_S10_2 105 199 IPR027486 -
Vvi19g636 200 PRINTS Ribosomal protein S10 family signature 103 116 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi19g636 200 PRINTS Ribosomal protein S10 family signature 138 153 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi19g636 200 PRINTS Ribosomal protein S10 family signature 159 173 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi19g636 200 Gene3D Ribosomal protein S10 domain 91 200 IPR036838 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g636 K02946 RP-S10, MRPS10, rpsJ; small subunit ribosomal protein S10 - vvi:100248042 361.688
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g636 . . Bda07g00398 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0019 Cone9ag0018 . . . Csa07g01069 . . . . . . Bpe11g00577 . . Bma14g00695 . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01084 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006978 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37