Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g637 ATGGGGTTTTCTGGGTTCAGTGCAAGCCTTTGTGTTGTGGGTCTTATCTTAGTTCTTTCAGGTGGTGGTTGTGAAGGAAAGGCAAACGACAACCTGAGATTCATTACTTGGAGTGATTTCACAGCGCGGAGGGCTAGACCCTTGTTGACTGTGAAATGTCGGAATAATACAACCAAAGTTATCGTTGTGGACAAGAATGGAGGGGGTGATTCAGACACAATTCAAGGTGCAGTCGATATGGTTCCCGTGCAAAACAAACAGAGAGTGAAGATTCAGATTCGTCCTGGAATTTACAGAGAAAAGGTGTATGTACCTGCATCCAAGCCATACATTTCATTCATTGGGAGCCAAATTCGGTCTGATGATGTGGTGATTACTTGGCACGACAAAGCATCAGATTTGGACTCCAATGGGTTTCGATTGGGAACAGTCAGAACAGCTTCTGTGACTGTAGAATCTGATTATTTCTGTGCAGCAGGGATCACCATTGAGAATTCAGTGGTTGCAAGGCCTGGAGTGCCTGGAATGCAAGCAGTGGCACTGAATATAAACGGTGATAAAGCCATGTTCTACAATGTCAGGCTCTTGGGAGCACAGGACACCCTCATGGATCTGTCTGGAACACACTACTTTAACCAGTGTTACATCCAAGGAAGCATTGACTTTATCTTTGGTGGGGCAAGATCAATCTATCAGGGATGTGTCATTGAATCAATAGCGACAACTTCAGGAGCAATTGCAGCTCATCGCATGGAATCACCTGACGATGGCACAGGATTCTCCTTTGTAAACTGCACAATCATTGGAACTGGAAAAATCTACCTGGGAAGAGCTTGGGGTAAATATTCAACAGCAGTTTACTCAAACAGCAGGATCGCTGATATGATAACTCCTAGCGGATGGAGTGACTGGAACAAGCCAGAGAGGAGAAGGACTGCAATGTTTGCAGAATTCAACAACACGGGCAAGGGAGCAGATAGAAGTAGAAGGGTTAAATGGTCCAAGTCTCTCAGCCTGGAGGAAGCCATGCCTTTTGTGGATTTGAACTTCATAGCAGCAGAAAAATGGCTTAGACTATAG 1080 45.0 MGFSGFSASLCVVGLILVLSGGGCEGKANDNLRFITWSDFTARRARPLLTVKCRNNTTKVIVVDKNGGGDSDTIQGAVDMVPVQNKQRVKIQIRPGIYREKVYVPASKPYISFIGSQIRSDDVVITWHDKASDLDSNGFRLGTVRTASVTVESDYFCAAGITIENSVVARPGVPGMQAVALNINGDKAMFYNVRLLGAQDTLMDLSGTHYFNQCYIQGSIDFIFGGARSIYQGCVIESIATTSGAIAAHRMESPDDGTGFSFVNCTIIGTGKIYLGRAWGKYSTAVYSNSRIADMITPSGWSDWNKPERRRTAMFAEFNNTGKGADRSRRVKWSKSLSLEEAMPFVDLNFIAAEKWLRL* 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8126478 8128014 + Vvi19g637 Vvi19g637 782136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g637 359 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Vvi19g637 359 PANTHER PECTINESTERASE QRT1 30 359 - -
Vvi19g637 359 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 30 359 - -
Vvi19g637 359 SUPERFAMILY Pectin lyase-like 58 357 IPR011050 -
Vvi19g637 359 Pfam Pectinesterase 61 353 IPR000070 GO:0030599|GO:0042545
Vvi19g637 359 Gene3D - 54 359 IPR012334 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g637 K01051 - vvi:100242915 723.005