Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g638 ATGTCTGCAAATGGTCAATGTTTTGTGGAGTGGAAAGAGCAATTTGTCTCCCAAGAGCGTGGCCACCGTGTGGTTCACTATTTCTTGAAGGATTCTGCTGGGAATTTCATCCTTGCAGTTGTGGGCACTGAGAGGAGTGTCAGACACATGTTCTACGTTGTTGCTGATGAGTTCTTGAATGCATACGGGTCGGAAAATTCTGTTCATGCTGGCTTCAAATGGAGATCCAGGCGGGAAGTTGTGGATTGGCTCACATCTATGCTATCAAAGCAGCATTTGCCTGGAGATGGATCGGAATCACCATCAAATGATCTGACACAAGGTTTAGGATCTTCCCAATTTGCAATGACTGGATTTGGTGCTCGACGGGCCCATATGCCAGATTACACGGGTCGGTTTGCTAGGAACCTGGAAGGACATGATTCAGACATTGTATGGTCAGGTGTTGCATGGACATGCGGTAAACAGCTCAAGCATTACCCGTCATTTTGCAGGAATGGGACTACAATAGTGATACAATCCTTTGTGTTTGTCATGGCCAAAGAGGAGGATCACTATCTTGCATATCTGGAAGATATGTATGAAGACCGGAAGGGACAGAAAAAGGTCAGAGTGAGGTGGTTTCACCATAATCAGGAAGTCAAGGGTGTAATTCCTTTACGAAATCCTCACCCAAAAGAAGTGTTCATCACGCCTTATGCACAGGTTATCAGTGCTGAGTGTGTCGACGGTCCTGCCATAGTCTTAACTCCTGAACATTATGAGAAATGCTTAGCGGCTTTTCCACACGCCTTCTTATCCAGAGTTCATCTTTGTTTTAGACAGTTTAGAAGCCATAGGGTGAAACCCTTTGATTTGAGTAAATTACGTGGCTATTTTGATCAAGCAATTCTCTCTTGGCGTCAAAGGTTTGTGAATGATCGTTCATGTGCCAGAATACCTCGTCGAGGGAGCCAGATGATGATGTATGAATCTCCACACATGAACTTAAAATATGATTTGTTAAGTCGGCGGCTACTTTCCCAGAAACATGTTGAGCCCCACCCTTGGCCTAACCCACTATTTAAGGTTGATGAAAAGATAGAATTGTTGTGTCAAGATAGTGGCATTCGAGGTTGCTGGTTCAGGTGCACAGTGTTACGGATATGTCGTAAACAAATGAAAGTTAGATATGTTGATGTGCAGGATGAAGATGGGTGTGGCAATCTTGAGGAATGGACCTCAATTTTCAAGCTAGCTGCCCCTGATAAACTTGGCATGAGATGCTTGGGCCGCCCAACAATTCGACCAGCCCCTTCTAGCACTCAAACAGATGTTGCTTTGAAGGTTGGGACTCCAGTGGATGCATGGTGGAGTGATGGCTGGTGGGAGGGCGTTATAACTGAAGCCAACAACTTAGGAGATGGTCCTCTGCAAGTTTACATCCCTGGTGAAAACTTGTTCTTGAATATGCACAGCAAGGATTTAAGAATTTCTAGAGATTGGGTAGGAAACCAGTGGGTTGATATTGAGGCAAAGCCTGATATACTGTCAGCCATATATGCAGCTATTAGCCCAGATGCAAAGATTTCCACCTCCTTGATCAGTAGTAAGGATGCTGCTGTCTTGTGTCCTATAGCTCCCATTAGTACCATGCAAAATGTTGTTGAAGATAAGTTGGACTTAGCTGCTCCAGTCAGTTCCTATGGCTTCCCTGAAGACATGGACTGTGTTAATGAAATGAAGCAGCCATCACGGGAAGATGGAGGGGGTGGAAATGATGCTGATCATGTCAATGATAGTCATAATAATGACAATTTAGATGAAGCCCATGGTGATGACAATGACGAGAACAATAACAATGATGAAGATGACCACAATGATGGTGATGACAATGATTGTGAGTTAGACCTGGAGGATTTTGAAACTGCTCGACAGAAATGTGTAGCAGTGGAGCTCATGGAAGTGGTGGCATAG 1956 44.43 MSANGQCFVEWKEQFVSQERGHRVVHYFLKDSAGNFILAVVGTERSVRHMFYVVADEFLNAYGSENSVHAGFKWRSRREVVDWLTSMLSKQHLPGDGSESPSNDLTQGLGSSQFAMTGFGARRAHMPDYTGRFARNLEGHDSDIVWSGVAWTCGKQLKHYPSFCRNGTTIVIQSFVFVMAKEEDHYLAYLEDMYEDRKGQKKVRVRWFHHNQEVKGVIPLRNPHPKEVFITPYAQVISAECVDGPAIVLTPEHYEKCLAAFPHAFLSRVHLCFRQFRSHRVKPFDLSKLRGYFDQAILSWRQRFVNDRSCARIPRRGSQMMMYESPHMNLKYDLLSRRLLSQKHVEPHPWPNPLFKVDEKIELLCQDSGIRGCWFRCTVLRICRKQMKVRYVDVQDEDGCGNLEEWTSIFKLAAPDKLGMRCLGRPTIRPAPSSTQTDVALKVGTPVDAWWSDGWWEGVITEANNLGDGPLQVYIPGENLFLNMHSKDLRISRDWVGNQWVDIEAKPDILSAIYAAISPDAKISTSLISSKDAAVLCPIAPISTMQNVVEDKLDLAAPVSSYGFPEDMDCVNEMKQPSREDGGGGNDADHVNDSHNNDNLDEAHGDDNDENNNNDEDDHNDGDDNDCELDLEDFETARQKCVAVELMEVVA* 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8128769 8134567 - Vvi19g638 Vvi19g638 782137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g638 651 Pfam Agenet domain 359 432 IPR008395 -
Vvi19g638 651 MobiDBLite consensus disorder prediction 572 602 - -
Vvi19g638 651 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 4 629 - -
Vvi19g638 651 MobiDBLite consensus disorder prediction 566 628 - -
Vvi19g638 651 SMART agenet_At_2 353 418 IPR014002 -
Vvi19g638 651 SMART agenet_At_2 439 497 IPR014002 -
Vvi19g638 651 PANTHER OS07G0607300 PROTEIN 4 629 - -
Vvi19g638 651 CDD BAH_plant_1 163 292 - -
Vvi19g638 651 Gene3D - 137 282 IPR043151 -
Vvi19g638 651 ProSiteProfiles BAH domain profile. 168 287 IPR001025 GO:0003682
Vvi19g638 651 MobiDBLite consensus disorder prediction 603 628 - -
Vvi19g638 651 SMART BAH_4 168 280 IPR001025 GO:0003682
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g638 - - - vvi:100265203 1282.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g638 . . Bda07g00399 . . . . . . . Cma01g01084 . Car01g00960 Car09g00907 . . Cpe02g00814 . . . . . . . . . . . . . . Cone6ag0017 Cone9ag0016 . . . . . . . . . . Bpe11g00579 . . Bma14g00175 . Cmo01g01130 Cmo09g00997 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003848 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 1 43