Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g639 ATGAATTTGGGCGATCTCAACAAGGTATGGGAAGTGAAGCCCCTGAAAAAGGCTGGAGAAGATGAAGCGAGGAAGATTCTGGAGAGGGTAGCCAAACATGTCCAACCCATTATGCGGAAACACAAATGGAGAGTCAAGCTTCTCTCTGAATTCTGCCCAAACAATCCGGCTCTTCTAGGGTTGAATGTAGGGGGTGGCATTCATGTGAAGTTGAGACTTCGGAGGCCCAACAGAGATTGGGATTTCTTCCCATTCGATCAAATTCTTGATACCATGCTTCATGAGCTTTGCCACAATGTCCATGGTCCTCATAATGCAGATTTCTACAAGCTTTGGGATGAAATCAGAAAGGAGTGTGAGGAGCTGATGGCAAAGGGCATAACTGGAACAGGGGAGGGGTTTGATCTTCCTGGGAGGCGTTTGGGTGGTTTCTCTCGTCAACCTCCTGTTTCATCTCTACGCCAAACTGCACTTGCTGCTGCAGAAAAGAGAGCCCGTCTAGGATCTCTAGTGCCATCTGGTCCTAAACGCCTTGGAGGTGATAGCAGTATCATGGATGCACTTAGTCCAATACAAGCTGCTGCAATGGCTGCAGAAAGGAGATTACAGGATGATATCTGGTGTGGCTCCCAGAGTTGTGAAGCTTCAGAGGGTGGTGAAAGTAGCTCTGATCTCTCTGACAGGCATGTACATAGGGAGCAAAGTGCTGGAATGTCAAGTCATGGTAGTGGTAGAGGTGCACTTGATTTGGATGTGACATCTCGAAAAAGAAGTCATGAAACTGGATCAAGTTTTGTGGATCTATCCAAGTGTGCTTCAGCCTCTGGGTCTGTGCTTGGCCACAATGCAACTCACAATACTGAGGAATCGATTATGTGGGAGTGTGGAATTTGCACTTTGTTGAATCCACCATTAGCTCCTATATGCAAGGTTTGCAGCACTGAGAAGCCAAAAGATGTTGGTATCAAGTACAAAGTCTGGTCATGTAAATTCTGTACTCTGGAAAACAACGTAGAGTTAGACAAATGTGGTGCATGCGGACAGTGGAGATATTCTCATGGCCCACCAGTGTCAACTCGTGCACCCAATCTTGGCACTTGA 1101 46.78 MNLGDLNKVWEVKPLKKAGEDEARKILERVAKHVQPIMRKHKWRVKLLSEFCPNNPALLGLNVGGGIHVKLRLRRPNRDWDFFPFDQILDTMLHELCHNVHGPHNADFYKLWDEIRKECEELMAKGITGTGEGFDLPGRRLGGFSRQPPVSSLRQTALAAAEKRARLGSLVPSGPKRLGGDSSIMDALSPIQAAAMAAERRLQDDIWCGSQSCEASEGGESSSDLSDRHVHREQSAGMSSHGSGRGALDLDVTSRKRSHETGSSFVDLSKCASASGSVLGHNATHNTEESIMWECGICTLLNPPLAPICKVCSTEKPKDVGIKYKVWSCKFCTLENNVELDKCGACGQWRYSHGPPVSTRAPNLGT* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8137616 8146878 - Vvi19g639 Vvi19g639 782138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g639 366 ProSitePatterns Zinc finger RanBP2-type signature. 293 312 IPR001876 -
Vvi19g639 366 ProSitePatterns Zinc finger RanBP2-type signature. 327 346 IPR001876 -
Vvi19g639 366 ProSiteProfiles WLM domain profile. 1 203 IPR013536 -
Vvi19g639 366 PANTHER ZINC ION BINDING PROTEIN 1 264 - -
Vvi19g639 366 PANTHER ZINC ION BINDING PROTEIN 269 366 - -
Vvi19g639 366 Pfam WLM domain 8 203 IPR013536 -
Vvi19g639 366 SMART zf_4 325 349 IPR001876 -
Vvi19g639 366 SMART zf_4 291 315 IPR001876 -
Vvi19g639 366 Gene3D - 286 326 - -
Vvi19g639 366 MobiDBLite consensus disorder prediction 213 248 - -
Vvi19g639 366 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 269 366 - -
Vvi19g639 366 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 264 - -
Vvi19g639 366 CDD M48_yhfN_like 92 118 - -
Vvi19g639 366 SUPERFAMILY Ran binding protein zinc finger-like 289 316 IPR036443 -
Vvi19g639 366 ProSiteProfiles Zinc finger RanBP2 type profile. 288 318 IPR001876 -
Vvi19g639 366 MobiDBLite consensus disorder prediction 221 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g639 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-] - vvi:100260002 739.954
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g639 . . Bda07g00400 . . . . . . . Cma01g01083 Cma09g00998 Car01g00959 Car09g00910 . Cpe06g00807 Cpe02g00815 Bhi09g01746 . . . . Mch11g1254 . . . . . . . . Cone6ag0016 Cone9ag0015 . . Lsi02g01845 Csa07g00943 . . . . . . Bpe11g00580 . . Bma14g00174 . Cmo01g01129 Cmo09g00999 . . . . . . . . . . . . . Cla09g02060 Cam09g2149 Cec09g2214 . . . . . . Chy01g01168 Cme01g00936
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006397 1 2 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 38