Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g648 ATGTCTACAACCATTCGATCTCGTGGCCTCTGCTCCTTCATCTCCAAGAACAACCGCCTCTTCTGCTCGAAAGTCTCCTCTTCTCCTCCCAAACCACCACCCTCCCCCGCTTCAGTCGCTGCCGTCGATCAATCTCCGGCTAACCAGCCGATCATATCTTCTGCTGCTCTCGTTGATGGCCAAAATCCACCTCCTATTCCTCCGCCGGCGCCTCCGTCCGCCAAGAAGTCATGGAACTTCCTCAAGTTCGGTCTCATTGGAGCTCTCACCGTCGGCGTTGCTACCGCTGGTTACGCTTCTTATGCATACACACTGGATGAAGTAGATGAGAAGACGAAGGCTTTTCGAGCATCTGCTAAGGATAGTGTGGAGGATGATGCATCTGCTTTTGATAAATTTAAAGCTTTGGCATACACTTCTGCAGTCACAGTCCCTGCTAAAGCAATTGATCTCTACTTAGACATGAGGAGATTAATTGAAGAACAAGTGCATGGTTTTACTGAACCATTATCAGATAAGCTGCTTCCTGATTTGCACCCAATGGAGCAACATGTGCTCACACTTGTTCTCGATCTGAATGAGACATTAATATACTCTGATTGGAAGCGTGATAGAGGTTGGCGAACATTCAAAAGACCTGGAGTTGATGCCTTCTTGGAACACCTAGCTCAGTTTTATGAAATTGTAGTGTATTCGGACCAACTGAGTATGTATGTTGATCCTGTTGTTGAGAGATTGGATAAGAAGCAGTGTATACGACATAGGCTATCAAGGGCTGCGACTAGATATCAGGATGGAAAACATTACAGAGACCTCTCAAAGCTGAACAGAGATCCTGCGAAGATTCTTTATGTGAGTGGCCATGCGCTAGAAACTAGCCTTCAGCCTGAAAATTGTGTCCAAATTAAGCCATGGAAGCTTGAAGAAGATGACACACAACTTTTGGATCTTATTCCTTTTCTTGAATATGTTGCCCGCAATAGACCAGCTGATATCAGACCAGTCCTAGCATCTTATCAAGGACATGATATTGCCAAGGAATTCATCGAGCGTTCTAAAGAGTATCAGAGGCGGATGCAAGAACAGAAGCAGCATGGCCGTTTCTGGAGACGTTGA 1116 45.79 MSTTIRSRGLCSFISKNNRLFCSKVSSSPPKPPPSPASVAAVDQSPANQPIISSAALVDGQNPPPIPPPAPPSAKKSWNFLKFGLIGALTVGVATAGYASYAYTLDEVDEKTKAFRASAKDSVEDDASAFDKFKALAYTSAVTVPAKAIDLYLDMRRLIEEQVHGFTEPLSDKLLPDLHPMEQHVLTLVLDLNETLIYSDWKRDRGWRTFKRPGVDAFLEHLAQFYEIVVYSDQLSMYVDPVVERLDKKQCIRHRLSRAATRYQDGKHYRDLSKLNRDPAKILYVSGHALETSLQPENCVQIKPWKLEEDDTQLLDLIPFLEYVARNRPADIRPVLASYQGHDIAKEFIERSKEYQRRMQEQKQHGRFWRR* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8241014 8247039 - Vvi19g648 Vvi19g648 782147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g648 371 ProSiteProfiles FCP1 homology domain profile. 181 324 IPR004274 -
Vvi19g648 371 Coils Coil 345 365 - -
Vvi19g648 371 PANTHER OS05G0513200 PROTEIN 23 362 - -
Vvi19g648 371 Gene3D - 171 354 IPR023214 -
Vvi19g648 371 SMART forpap2 184 312 IPR004274 -
Vvi19g648 371 SUPERFAMILY HAD-like 173 337 IPR036412 -
Vvi19g648 371 CDD HAD_FCP1-like 186 302 - -
Vvi19g648 371 Pfam NLI interacting factor-like phosphatase 186 333 IPR004274 -
Vvi19g648 371 MobiDBLite consensus disorder prediction 24 44 - -
Vvi19g648 371 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 23 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g648 K17496 TIM50; mitochondrial import inner membrane translocase subunit TIM50 - vvi:100244624 696.812
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g696 Vvi19g648 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g648 . . . . . . . . . . Cma01g01081 Cma09g01002 Car01g00956 Car09g00913 Sed07g2743 Cpe06g00810 Cpe02g00817 Bhi09g01749 Tan01g3181 Cmetu01g1982 . . Mch11g1259 . . . . . . . . . . Cone14ag1212 Cone15ag1233 Lsi02g01842 Csa07g00939 . . . . . . Bpe11g00582 . . Bma14g00172 . Cmo01g01127 Cmo09g01002 . . . . . . . . . . . . . Cla09g02063 Cam09g2152 Cec09g2217 . . . . . . Chy01g01165 Cme01g00930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005181 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 1 1 4 2 2 41