Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g649 ATGGAGGGAAAGCGTTCAAGCTCACAACGCAGCGATCTGCTTCGGAAGATAAGAGAGTTTACTCGATCAATTCTGGATGATCTCTCGATTGGAAAATCTCCAGTGGTTTTGATTGATCGGTTCAGAAATTATTGCACAGATAACACTGGAAACTGCTGTTGCAGCTCTGATTTGTCCAAGGGCAAGGAGATTCTCACACTTCAGAGGGAATGTCATGCACGTAGACTGGATGTCTTGCTAAGAGTGCTATTGATCGTTCAGCAACTTCTACAAGAAAATAGACATGGATCAAAGAGAGATATATATTACATGCATCCGTCTGTATTTTCAGATCAGTCAGTTGTAGACCGAGCAATAAATGACATATGTATCCTTCTGCAGTGCAGTCGCCACAACCTAAATGTGGTGTCCGTTGGAAAAGGGAAAAACTCCAAAAGGAGAAGCAACAAAAGCCACACAGCTGAGGAAGATCGCATAAAATCTAAAAGCAAACCAAAACAAGCACTAGTTAGAACTAAGGAAGGCAAAATTTTCCCTATCAAAAACACAAAAATTATTCTCCTTAGACCTTTGTCTAAGGGATTATTGGTGATGGGCTGGTTAAGATTCTTAGAAGCTGGAAAGAAATTTGATTGCATAAATGGCCCAAACACTGCCTACCCTGTCCCTGTGCATGTTGAAGAAGTCAAAGATATTGTCAGTGTTGCCCAGTATATATTGGTTGTGGAGAAAGAATCAGTGTTCCAGCGGTTAGCAAATGACAAATTCTGCAACAAAAATCGCTGCATTGTTATCACAGGAAGAGGATATCCAGATATCCCTACAAGAAGGTTTTTGCGTCTTCTCGTAGAGAAGTTGCATCTGCATGTCTATTGCTTGGTAGATTGCGATCCTTATGGCTTTGACATCCTGACAACATATCGGTTTGGTTCCATGCAAATGGCCTATGATGCAAAATTTCTACGAGTCCCAGAGATAGAATGGCTTGGAGCTTTTCCTTCAGACTCTGAGAAATATGGTCTTCCAGAACCATGTCTTCTTCCTTTGACAGCAGAAGATAAGAGGAAAACCGAAGCCATTTTACATCGATGCTATCTCCAACAAGAATTGCTGCACTGGAGGTTGGAACTAGAGCTGATGCTGCAAAGAGGAGTAAAATTTGAGATCGAAGCATTGTCTGTGCATTCACTTTCCTTTTTGTCCGAAAATTATATACCATCCAAGATTCAAGTTGCAGAGGGCGTGTAA 1248 41.27 MEGKRSSSQRSDLLRKIREFTRSILDDLSIGKSPVVLIDRFRNYCTDNTGNCCCSSDLSKGKEILTLQRECHARRLDVLLRVLLIVQQLLQENRHGSKRDIYYMHPSVFSDQSVVDRAINDICILLQCSRHNLNVVSVGKGKNSKRRSNKSHTAEEDRIKSKSKPKQALVRTKEGKIFPIKNTKIILLRPLSKGLLVMGWLRFLEAGKKFDCINGPNTAYPVPVHVEEVKDIVSVAQYILVVEKESVFQRLANDKFCNKNRCIVITGRGYPDIPTRRFLRLLVEKLHLHVYCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRVPEIEWLGAFPSDSEKYGLPEPCLLPLTAEDKRKTEAILHRCYLQQELLHWRLELELMLQRGVKFEIEALSVHSLSFLSENYIPSKIQVAEGV* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8278979 8284207 - Vvi19g649 Vvi19g649 782148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g649 415 MobiDBLite consensus disorder prediction 148 165 - -
Vvi19g649 415 Gene3D - 1 138 IPR036388 -
Vvi19g649 415 Pfam Type IIB DNA topoisomerase 74 135 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Vvi19g649 415 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 4 412 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi19g649 415 Gene3D - 193 413 - -
Vvi19g649 415 PRINTS DNA topoisomerase VI subunit A family signature 98 109 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi19g649 415 PRINTS DNA topoisomerase VI subunit A family signature 112 129 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi19g649 415 PRINTS DNA topoisomerase VI subunit A family signature 130 145 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi19g649 415 SUPERFAMILY DNA topoisomerase IV, alpha subunit 72 142 IPR036078 GO:0003677|GO:0005694
Vvi19g649 415 CDD TOPRIM_TopoIIB_SPO 238 399 IPR034136 -
Vvi19g649 415 SUPERFAMILY DNA topoisomerase IV, alpha subunit 188 410 IPR036078 GO:0003677|GO:0005694
Vvi19g649 415 MobiDBLite consensus disorder prediction 139 165 - -
Vvi19g649 415 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 4 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g649 K10878 SPO11; meiotic recombination protein SPO11 - vvi:100256655 668.307
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g649 . Blo03g01480 . . . Bpe08g01095 . . . . . Cma09g01003 . Car09g00914 . Cpe06g00811 . Bhi09g01751 . . . . Mch11g1260 . . . . . . . . . . . . Lsi02g01841 Csa07g00937 . . . . . . . . Bma07g01249 . . . Cmo09g01003 . . . . . . . . . . . . . Cla09g02064 Cam09g2153 Cec09g2218 . . . . . . Chy01g01164 Cme01g00928
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005619 0 4 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 3 1 1 40