Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g650 ATGGCATCTGGTAGTGTGAAACAGCCCTTAATATCAAGATATTCAGGTCCTATATCTCGAACCAACCAGAAAGGTACCCTCAAGAGAAGTAGACTTCGCCGCTGTAAAAGTGCCCTACCAGAATATAATCTTCCAGACACTAACAAAGCTGCCTCATCTCCACGCTCTGAATCCAGAATCCAGGGACTTCACCCAAGTTTGATTAAAGTAATCATAGTCTTGTCCATTTACCTGGGTGCTGGCACTCTATGCTTCTACCTCGCCAGGCATTGGATGAAGGGAAAGAAAACAAATGGAGTTCTGGATGCTGTTTATTTCTGTGTTGTGACAATGAGCACAGTTGGGTATGGAGACCTTGTCCCTGATAGTGCAGCTACAAAACTACTTGCCTGTGCCTTTGTCTTCACAGGTATGGCTTTGATTGCTCTAAGTTTAAGCAAAGCAGCAGACTATCTGGTAGAGAAGCAGGAAATGTTGCTAATTAGAGCCTTATACATGCCCAAACATGTTGGTATGGCTGAAATTTTAAAGGAAATGGAAACCAACAAAGTGAGATACAAATGCCTCATGGTTTTTCTTCTTCTTTTGCTGATTATTACTTGTGGGACAGTCTTCCTAGCTAAAGTTGAGAAATTGAGCTTTGTCGATGCATTCTATTGTGTTTGTTCTACCATCACAACCTTGGGCTATGGAGATGTTAGCTTCTCCACTGAAGCCGGACGTGCTTTTGCGGTGCTTTGGATATTGTTTGGTACCATTTCTTTAGCACAGTTTTTCCTTTATGTTGCCGAGCTTAACACTGAAAGAAGACAAAAGAAATTAGCGAAATGGGTCCTCGGACGGAAGATGACAAATGTAGATTTGGAGGTTGCTGATCTTGATGATGATGGAGTCGTTGACGTTTCTGACTTCATCATCTATAAGCTGAAAGAGATGGGGAAGATCAGCCAAGAAGATATTTCACTTGTAATGGGAGAGTTTGAAGAACTTGATATTGATCAGTCAGGGACATTATCAGCCACTGATCTAACACTTGCTCAATCTCAACCTGTTGAGGAGGAGGCAACACCACCATAG 1077 42.25 MASGSVKQPLISRYSGPISRTNQKGTLKRSRLRRCKSALPEYNLPDTNKAASSPRSESRIQGLHPSLIKVIIVLSIYLGAGTLCFYLARHWMKGKKTNGVLDAVYFCVVTMSTVGYGDLVPDSAATKLLACAFVFTGMALIALSLSKAADYLVEKQEMLLIRALYMPKHVGMAEILKEMETNKVRYKCLMVFLLLLLIITCGTVFLAKVEKLSFVDAFYCVCSTITTLGYGDVSFSTEAGRAFAVLWILFGTISLAQFFLYVAELNTERRQKKLAKWVLGRKMTNVDLEVADLDDDGVVDVSDFIIYKLKEMGKISQEDISLVMGEFEELDIDQSGTLSATDLTLAQSQPVEEEATPP* 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8297132 8299782 + Vvi19g650 Vvi19g650 782149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g650 358 Pfam Ion channel 194 265 IPR013099 -
Vvi19g650 358 Pfam Ion channel 72 153 IPR013099 -
Vvi19g650 358 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Vvi19g650 358 Gene3D - 64 159 - -
Vvi19g650 358 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Vvi19g650 358 MobiDBLite consensus disorder prediction 1 25 - -
Vvi19g650 358 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 21 344 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g650 358 PANTHER TWO PORE POTASSIUM CHANNEL A 21 344 - -
Vvi19g650 358 MobiDBLite consensus disorder prediction 1 26 - -
Vvi19g650 358 SUPERFAMILY EF-hand 251 346 IPR011992 -
Vvi19g650 358 SUPERFAMILY Voltage-gated potassium channels 179 283 - -
Vvi19g650 358 PRINTS Two pore domain K+ channel signature 109 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g650 358 PRINTS Two pore domain K+ channel signature 226 235 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g650 358 Gene3D - 162 287 - -
Vvi19g650 358 SUPERFAMILY Voltage-gated potassium channels 66 162 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g650 K05389 - vvi:100243010 659.448