Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g651 ATGGCCTGTGGTGGTGCGAATCAACATTCAATATCAGGACATAACCACTCGACCTCAATTCAACATTCGGAATCCACTGTTCAAAAACACCACACAAGTTCTATTAAAGTAATCATCATCTTGGCCATTTACCTTGGTGTTGGCACTGTCTGCTTCTACCTCACCCGGCATCAGATGAAAGGAAAGAAAACCAATGGAGTTGTAGATGCTGTCTATTTCTGTATTGTAACAATGACCACGGTCGGATACGGAGACATCGTCCCGGACAGCGTAGCTACAAAACTGCTTGCCTGTGCTTTTGTCTTCACAGGCATGGCTCTTATAGCACTATGTCTGAGCAAAGCTGCAGACTATCTGGTAGAAAAGCAGGAAACATTGCTAGTCAGAGCTTTATACATGTATAAAGATGTCGGTATGGCTGAGATCTTAAAGGAGATGGAAACCAACAGAGTGAGATACAAATGTTTCATGGTTTTTCTTCTTCTTCTGGTAGTAATCATTGGTGGAACAGTGTTCCTATCTAAAGTGGAGGAGTTGAGCTTCATTGATTCATTTTATTGTGTTTGTTGTACAATCACAACCCTAGGGTATGGAGATGTGAGCTTCACCACCAAAGCAGGAAGGGCTTTTGCTGTATTTTGGATACTGACGGGAACTATTTCTTTAGCGCAGTTCTTCCTCTACCTTGCTGAGCTTAACACTGAAAGAAGGCAAAAGAAGTTGGTCAAGTGGGTTCTTGATAGGAAAATGACAAACGCAGATTTGGAGGTTGCTGATCTTGACGAGGATGGGGTTGTTGATGTTTCTGACTTCATCATCTATAAGCTGAAAGAGATGGGGAAGATCAGCGAAGAAGATGTTTCAATTGTAATGAAGGAGTTCGAAAAACTTGATATTGATCAGTCAGGAACATTGTCAGCCGTTGATATAACACTTGCTCAATCCTTTCAAGCTATTGGATGA 963 41.74 MACGGANQHSISGHNHSTSIQHSESTVQKHHTSSIKVIIILAIYLGVGTVCFYLTRHQMKGKKTNGVVDAVYFCIVTMTTVGYGDIVPDSVATKLLACAFVFTGMALIALCLSKAADYLVEKQETLLVRALYMYKDVGMAEILKEMETNRVRYKCFMVFLLLLVVIIGGTVFLSKVEELSFIDSFYCVCCTITTLGYGDVSFTTKAGRAFAVFWILTGTISLAQFFLYLAELNTERRQKKLVKWVLDRKMTNADLEVADLDEDGVVDVSDFIIYKLKEMGKISEEDVSIVMKEFEKLDIDQSGTLSAVDITLAQSFQAIG* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8304201 8305387 + Vvi19g651 Vvi19g651 782150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g651 320 PRINTS Two pore domain K+ channel signature 76 104 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g651 320 PRINTS Two pore domain K+ channel signature 193 202 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g651 320 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 14 310 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g651 320 Gene3D - 159 220 - -
Vvi19g651 320 Gene3D - 221 316 - -
Vvi19g651 320 Pfam Ion channel 161 232 IPR013099 -
Vvi19g651 320 Pfam Ion channel 39 120 IPR013099 -
Vvi19g651 320 SUPERFAMILY Voltage-gated potassium channels 33 129 - -
Vvi19g651 320 SUPERFAMILY Voltage-gated potassium channels 127 249 - -
Vvi19g651 320 SUPERFAMILY EF-hand 208 311 IPR011992 -
Vvi19g651 320 Gene3D - 28 126 - -
Vvi19g651 320 ProSitePatterns EF-hand calcium-binding domain. 298 310 IPR018247 -
Vvi19g651 320 ProSitePatterns EF-hand calcium-binding domain. 259 271 IPR018247 -
Vvi19g651 320 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 14 310 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g651 K05389 - vvi:100246381 603.594