Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g652 ATGGATCATGGTGCTGCAGCAAAGCCCTCAGTATTAGGATTGTTAAATCCTTCACCGCAAACCAATCAAAAAGCTTCCCTCAAGAGAAAACGATACCGCCGGTGTAGAAGTGCCCCGGTAGCAGCATGTACGCATCCACATCCTGCTGGCCCTGACTCACTGCACCGCTCTCAAATCATTAGCCGTAAACTCCACCCAAATGTTGTTAAAGTGATCGCTGTCTTGGCCCTTTACCTTGGTGCTGGCACTGTAATCTTCTACCTCACCAGGCATCACATGAGGGGGAAGAAAACAAATGGAGTTGTAGATGCTGTCTATTTCTGTATTGTAACAATGAGCACAGTCGGGTATGGAGACATCGTCCCGAACAGCGTTGCTACAAAGCTACTTGCCTGTGCTTTTGTCTTCATAGGGATGGCTCTCATAGCACTAGGCTTGAGCAAAGCCGCAGACTATCTGGTAGAGAAGCAGGAAATGTTACTAGTTAGAGCCTTGCATATGAACCAAAATGTTGGTACGGTTGAAATGATGAGGGAGATGGAAACCAACAGAGTGAAAAACAAATGTCTAGTGATGTCTCTTATTCTTGTGGTGGTTATCATTGCTGGGACAGTCTTTCTAGCTGAAGTGGAGGGAATGAGCTTCGTTGATGCATTTTATTGTGTTTGTTGTACCATCACAACCCTGGGCTATGGAGATGTGAGCTTCACCACCCAAGGAGGGAGGGTTTTCGCGATATTTTGGATATTGACCGGTAGTATTTCTTTAGCTCAGTTGCTCTTCTACATTGCTGAGCTTAATACCGAGAGAAGACAGAAGAAATTAGTGAAGTGGGTGCTTGGCCGGCAGATGACAAAACTAGATTTGGAGGCTGCTGATCTTGACGAAGATGGGGTTGTCGATGTGTCTGACTTCATCATCTATAAGCTCAAAGAGATGGGGAAGATCAGCCAAAAAGATATTGCAATTGTAATGAAGGAGTTTCAAGAACTAGACGTCGACCAATCAGGAACATTGTCTAACACTGACGTACAGCTTGCTCAATTATCTTAA 1053 44.92 MDHGAAAKPSVLGLLNPSPQTNQKASLKRKRYRRCRSAPVAACTHPHPAGPDSLHRSQIISRKLHPNVVKVIAVLALYLGAGTVIFYLTRHHMRGKKTNGVVDAVYFCIVTMSTVGYGDIVPNSVATKLLACAFVFIGMALIALGLSKAADYLVEKQEMLLVRALHMNQNVGTVEMMREMETNRVKNKCLVMSLILVVVIIAGTVFLAEVEGMSFVDAFYCVCCTITTLGYGDVSFTTQGGRVFAIFWILTGSISLAQLLFYIAELNTERRQKKLVKWVLGRQMTKLDLEAADLDEDGVVDVSDFIIYKLKEMGKISQKDIAIVMKEFQELDVDQSGTLSNTDVQLAQLS* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8315681 8317995 + Vvi19g652 Vvi19g652 782151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g652 350 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 19 343 - -
Vvi19g652 350 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 19 343 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g652 350 Pfam Ion channel 195 266 IPR013099 -
Vvi19g652 350 Pfam Ion channel 74 154 IPR013099 -
Vvi19g652 350 SUPERFAMILY EF-hand 285 345 IPR011992 -
Vvi19g652 350 Gene3D - 193 254 - -
Vvi19g652 350 Gene3D - 65 161 - -
Vvi19g652 350 MobiDBLite consensus disorder prediction 1 26 - -
Vvi19g652 350 SUPERFAMILY Voltage-gated potassium channels 181 286 - -
Vvi19g652 350 Gene3D - 311 345 - -
Vvi19g652 350 SUPERFAMILY Voltage-gated potassium channels 61 167 - -
Vvi19g652 350 Gene3D - 281 310 - -
Vvi19g652 350 PRINTS Two pore domain K+ channel signature 110 138 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g652 350 PRINTS Two pore domain K+ channel signature 227 236 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g652 350 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g652 K05389 - vvi:100263526 670.233