Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g658 ATGGAAGAGGATAACGTGTCCAAAGAAAATGAAGCAAGTGAAGAGAAGGTAGAGAGCAAAGAGAATGTGGAAGAGAAGGTTGATGGTTCTAAGGAAAAAGAGAAGGGAGGAGAGATAAAGGATGGGAAAGGGCCAAGGAAGCGAGGAAAAGGGAGGAGCAGTGGAGAGAGAGTCAAAGATAAGGTGAAGGAAGTGGAAGAAAAAAAGGTGAAGGAACCAAGGACTCCTGCAGCTTCCACTATTGCACGACCTGTACGGGAGCGGAAATCTGTTGAAAGGCTCGTGGCATCCATTGAAAGAGACTCAACAAAGGAATTTCATATTGAAAAGGGTCGTGGGACTGCACTGAAAGATATACCTAATGTGGCATACAAATTGTCGAAAAGGAAGAGCGATGACACTTTTAAATTGCTTCATACCATTCTCTTTGGAAGGAGAGGAAAGGCGTTTCAGGTTAAGAATAATATATCCCGGTTTTCTGGCTTTGTGTGGCATGAGAACGAGGAAAAACAAAAGATTAAAGTAAAAGAGAAATTTGACAAGTGCGTTAAAGAGAAGCTGTTGGAGTTCTGTGACGTTCTTGACATATCAATTGCCAAAACTACAACAAGGAAGGAAGATATCGTTACAAAGCTGATAGAATTTTTGGTGGCTCCTCATCCTACAACTACTGTGTTACTTGCAGAAAAAGAGCAGTCAATTAAGGGCAAAAAGCGCAAGAGGGTGGTCAAACGGAATTCATCTATGTCTGGGAGCACATCTTCAAAACGTTCAGCGAAGAGTCGAAGAAAGACTGAGGATACTGATACAATGGAGGAGAAAAAGAGTATACATGACTCTGAAGATGATTCAGAAGAAGAGGATGACAAAAATGAAGAGGAGGAAAATGAGAATGGTATTCCTGAAAGATCTGAGGATGAGATATCTGAGCATTCTGAAAGTGAGGAAAAAGGAAATGAATCAGAAGATGAGTCTGAAGAAGAAATAGTAAAACGCAAACGAGATTCAAAGAAAACACCCGTGAAGAAGGAATCCGCAGGAAAAGCTAAAACCAAGAAAACACCAACACCAAAGAAATCAATCTCTCCACCAAAAAGGTCTAAGAAATTATCATCAAACCGCTCTAAGGCTGATGATGACAGTGATACAAGTCCAAAGGTGTTTTCAAGAAAGAAGAAAAATGAGGTAGCTAAAGGAAGGTCTTCGACTCCAAAGAAATCTGTCTCCAAGGAAAAACCTGGGAAAAAGGCGGTGAAAGGGAAGGACAAGCCCAAAGAAGATAAATCGAGTCCAAGTGATGACGAATTAAGAAATGCAATATGTGAAATACTTAAAGAAGTTGACTTCAATACGGCTACATTTACCGACATTCTGAAGCAACTTGCTCGGCAGTTTGAAACGGATCTTACTGCCAGAAAGTCATCCATAAAGCTCATCATCCAGGAAGAGCTTACAAAGCTAGCTGATGAGGTTGACGATGAAGACGAAGAAGGTGATGCTGAGAAAGATGAAGCCCAGCCTGCCAGCCAAGAGGTGGAGGCCTGA 1545 41.49 MEEDNVSKENEASEEKVESKENVEEKVDGSKEKEKGGEIKDGKGPRKRGKGRSSGERVKDKVKEVEEKKVKEPRTPAASTIARPVRERKSVERLVASIERDSTKEFHIEKGRGTALKDIPNVAYKLSKRKSDDTFKLLHTILFGRRGKAFQVKNNISRFSGFVWHENEEKQKIKVKEKFDKCVKEKLLEFCDVLDISIAKTTTRKEDIVTKLIEFLVAPHPTTTVLLAEKEQSIKGKKRKRVVKRNSSMSGSTSSKRSAKSRRKTEDTDTMEEKKSIHDSEDDSEEEDDKNEEEENENGIPERSEDEISEHSESEEKGNESEDESEEEIVKRKRDSKKTPVKKESAGKAKTKKTPTPKKSISPPKRSKKLSSNRSKADDDSDTSPKVFSRKKKNEVAKGRSSTPKKSVSKEKPGKKAVKGKDKPKEDKSSPSDDELRNAICEILKEVDFNTATFTDILKQLARQFETDLTARKSSIKLIIQEELTKLADEVDDEDEEGDAEKDEAQPASQEVEA* 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8443446 8455090 + Vvi19g658 Vvi19g658 782157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g658 514 MobiDBLite consensus disorder prediction 282 301 - -
Vvi19g658 514 PANTHER DEK PROTEIN 9 514 IPR044198 GO:0003677|GO:0006325
Vvi19g658 514 MobiDBLite consensus disorder prediction 1 79 - -
Vvi19g658 514 MobiDBLite consensus disorder prediction 259 281 - -
Vvi19g658 514 MobiDBLite consensus disorder prediction 487 514 - -
Vvi19g658 514 MobiDBLite consensus disorder prediction 228 435 - -
Vvi19g658 514 Pfam DEK C terminal domain 431 484 IPR014876 -
Vvi19g658 514 MobiDBLite consensus disorder prediction 371 435 - -
Vvi19g658 514 MobiDBLite consensus disorder prediction 487 502 - -
Vvi19g658 514 Coils Coil 477 497 - -
Vvi19g658 514 SUPERFAMILY DEK C-terminal domain 424 484 - -
Vvi19g658 514 PANTHER DNA LIGASE 1-LIKE ISOFORM X1 9 514 - -
Vvi19g658 514 Coils Coil 3 23 - -
Vvi19g658 514 Gene3D - 421 486 - -
Vvi19g658 514 Coils Coil 277 297 - -
Vvi19g658 514 MobiDBLite consensus disorder prediction 302 351 - -
Vvi19g658 514 MobiDBLite consensus disorder prediction 9 74 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g658 K17046 DEK; protein DEK - vvi:100249691 676.781
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g658 . . . . . . . Bma13g01112 . Cmo06g00688 . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1216 Cone15ag1237 . . . . . Blo10g00863 . Bda12g00961 . . . . . . . . . . . Cpe14g00791 . . . . . . . . . . . . . . . Lsi05g00493 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007248 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 1 36