Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g659 ATGGCGGATTCCGACAACGACTCCGGCGGCCATAACAACAACGCGGGCAGCGAGCTTTCGCCGCGAGAGCAGGACAGGTTCTTGCCGATTGCAAACGTGAGCCGGATCATGAAGAAGGCCCTTCCGGCGAATGCGAAGATCTCCAAGGACGCGAAGGAGACAGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATCACCGGAGAAGCGTCGGACAAGTGCCAGAGAGAGAAGCGGAAGACGATCAACGGCGACGACCTGCTCTGGGCGATGACGACTCTAGGGTTCGAGGACTACGTGGATCCGCTGAAGATTTACCTTCACAGGTTTCGCGAGATGGAAGGCGAGAAGACCTCCATGGGACGCCAAGGGGAGAAGGATGGTCCCAGCGCTGCTGGGGGCAATGGCAGCGTCGTGAATCCAGCGAACACCGGTAGTGGTGGTTTCGGGGAGACTGGGATGTATGGTGCGATACCATCAACGATGATGATGATGGGCCATCATCAGCATCAGGGGCACGTGTACGGGTCCAGCGCATACCATCCGATGGCAGCGGCCGGTGCCAATTTCGGGTCGGGTAAGGCCAATTCGGGTCATCCCGGGTCCGGACCCTCTGCGGGCAGACCGAGATAG 633 59.4 MADSDNDSGGHNNNAGSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKIYLHRFREMEGEKTSMGRQGEKDGPSAAGGNGSVVNPANTGSGGFGETGMYGAIPSTMMMMGHHQHQGHVYGSSAYHPMAAAGANFGSGKANSGHPGSGPSAGRPR* 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8458281 8459992 + Vvi19g659 Vvi19g659 782158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g659 210 MobiDBLite consensus disorder prediction 1 24 - -
Vvi19g659 210 MobiDBLite consensus disorder prediction 186 210 - -
Vvi19g659 210 MobiDBLite consensus disorder prediction 1 20 - -
Vvi19g659 210 MobiDBLite consensus disorder prediction 115 149 - -
Vvi19g659 210 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi19g659 210 Gene3D Histone, subunit A 17 135 IPR009072 GO:0046982
Vvi19g659 210 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Vvi19g659 210 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 177 - -
Vvi19g659 210 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 177 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi19g659 210 SUPERFAMILY Histone-fold 24 130 IPR009072 GO:0046982
Vvi19g659 210 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Vvi19g659 210 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Vvi19g659 210 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g705 Vvi19g659 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14433 PF00808 CBFD_NFYB_HMF 2.10E-27 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g659 K08065 - vvi:100251431 418.313