Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g66 ATGCTTGGCCTACTGAAGGGTCTTGATTTGAATGGAACTTTACCTGATGAGTTTGGAGATCTTCCTTATTTGCAAGTACTTGATCTCTCCCGCAACTATATCAATGGATCGATCCCTGCTAGTTTTGGTCGGCTTTCTCTTACCAATCTCTCTCTTTTTGGAAACAGAATCTCTGGGTCGATTCCTGATGAAATCAGTAATATCAGTACACTTGAGGAGCTGGTCTTGGAAGCTAATCAGCTTGGAGAACAACTCCCTCCAAGTCTTGGAAAATTGAGTTATTTAAAAAGACTTGTTCTCTCTGCAAACAATTTCACAGGAGCAATACCAGAAAATTTTCACAATCTCAAGAACCTAACTGATTTTAGGATAGATGGGAATAATTTATCTGGGAAGATACCAGATTGGATTGGGAATTGGACCAAACTTGAGAAACTGTATCTGCAAGGCACATCAATGAACGGGCCCATTCCTTCTATTATATCCCAGTTGAAAAACTTAACCGAGTTGTTAATATCTGATTTGAGTGGACCGACTACATCTTTCCCCAATTTGGAGCATATGAATAACTTAAAAACATTGGTGATGAGAAATTGCTCCATTACAGGTGAAATCCCAGAATACATTGGAAATATTGAAAGTTTAAAACTTTTAGACCTGACCTTCAACAAACTGAATGGTAAAATTCCAGAGAGCTTTAAGCAAGAAAACAAGGAGAAAACAAAACTCGATTTCATGTTTCTCACCAACAACTCACTGACTGGAGAAGTGCCCAGCTGGATAATATCAGACACTGAAAACAAAATTGATTTATCTTACAACAATTTTACAGGGCCGCCCATTGGTTCTTGCGTATACCCCGTGAACTTGGTCTCCAGTTATGCATCTTCAGCAAGAGACATGACCCCTCGGTGCTTACAGAAGGATCTCCCATGCTCTGGAAAAGCCGAACACTATTCCTTGTATATCAATTGTGGAGGAGACAAAATAACTTCAAAGAAAGGGAAGAAATATGAAAAAGACGATGGAATTGAGGGTGCATCACAGTTCTCTATTGATAGTACAAACAAATGGGCTTATAGCAGTACAGGGGCTTTCATAGGCAAAACGGATCATAGTTACCTAGCCAAAAACACATCTGCTTTGAAGTCAGAGGATGCAGAGATCTACCAAACTGCTCGTCTTGCTCCCATCTCACTCAAGTATTATGGGCTTTGCTTGCGAAAGGGCCCTTATAAAGTGCGACTCCACTTTGCTGAAATCATGTTTTCTAATAACCAGACATTTGGTAGCCTTGGGAGGCGCTTGTTCGATGTTTCAATTCAAGGAACTGTAGTTTTAAGGGATTTTAATATCATGGAAGAAGCTGAAGGTGCCGGTAATGGCATTTATAGGGATTTTGATGCTTCTGTTAATGGTAGCACTCTGGAGATCCACTTATACTGGACAGGCAAAGGGACTAATTCCATTCCGGAAAAAGGTGTATATGGACCTCTTATATCTGCTATTGCAGTGACACCAAATTTTGATCCCAACCCGGGGCTGTCTGTTGGAGGTATTATCGGCATTGTGATAGCTTCATGTGTGGTCCTCGTATTGATTTTGGTACTCCTACGAATGAAAGGCTACTTAGGAGGAAAAGACCTCGAAGATAGAGAACTACGTGAGCTAGGAACTGGTTATTTTAGTTTACGACAGATCAAAGCTGCTACCAATAACTTTGACTCTGCAAATAAGATTGGTGAAGGTGGATTTGGCCCAGTTTACAAGGGTGTACTGCCAGATGGTTCAGTAATTGCTATTAAGCAGCTCTCGTCTAAATCGAAGCAAGGGAACCGAGAATTTGTAAATGAAATAGGCATGATATCTGCCTTACAACACCCAAATCTTGTGAAGCTTTATGGCTGTTGTATTGAAGGGAACCAGTTGTCGCTCATATACGAATATTTGGAAAACAATTGTCTTGCACGTGCACTTTTTGATCGCAATGAACAGCGGCTAAATTTGGACTGGCCAACTAGGAAGAAGATATGCTTGGGGATAGCAAGAGGATTGGCATATCTTCATGAGGAGTCAAGATTGAAAATTGTTCATAGAGATATAAAGGCAACAAATGTGCTGCTTGATAAGAATCTAAATGCTAAGATATCTGACTTTGGCTTGGCTAAGCTGGATGAAGACGAGAACACCCATATCAGCACACGGATAGCTGGAACCATAGGATACATGGCTCCTGAATATGCAATGAGGGGTTACTTGACCGACAAAGCAGATGTTTACAGCTTTGGAATTGTTGCTTTAGAGATTGTCAGCGGGAAAAGCAACACCAATTACAGGCCAAAGGAAGAGTTTGTTTATCTTCTTGATTGGGCTTATGTCCTGCACGAGCAGGGAAATCTTCTGGAGCTGGTGGATCCAAGTCTTGGTTCAAACTACTCAGAGGAGGAGGTGATGAGGATGCTGAACTTGGCCCTCTTATGCACCAACCAATCTCCCACTCTCAGGCCACCCATGTCCTCTGTAGTGAGTATGCTTGACGGCAAAATTGCAGTCCAAGCACCAACAATCAAGCATGATACTATGAACCCGGATATGAGATTCAAAGCCTTTGAGAAGCTCTCACTGGACAGCCAGTCTCATGTCTCAGCATTCTCTGTTGACAATCAGGTCCAAGGCAGCATATCACTTGATGGACCATGGATTGATTCCTCAATTTCCCTCCATAGCAGAGAAGAAACAAGGGACTTTTCTTCATCAAGCAAGCTTCTTACAGGACATCAAGATCTTTACAGTATACATTTGAACTGA 2808 41.52 MLGLLKGLDLNGTLPDEFGDLPYLQVLDLSRNYINGSIPASFGRLSLTNLSLFGNRISGSIPDEISNISTLEELVLEANQLGEQLPPSLGKLSYLKRLVLSANNFTGAIPENFHNLKNLTDFRIDGNNLSGKIPDWIGNWTKLEKLYLQGTSMNGPIPSIISQLKNLTELLISDLSGPTTSFPNLEHMNNLKTLVMRNCSITGEIPEYIGNIESLKLLDLTFNKLNGKIPESFKQENKEKTKLDFMFLTNNSLTGEVPSWIISDTENKIDLSYNNFTGPPIGSCVYPVNLVSSYASSARDMTPRCLQKDLPCSGKAEHYSLYINCGGDKITSKKGKKYEKDDGIEGASQFSIDSTNKWAYSSTGAFIGKTDHSYLAKNTSALKSEDAEIYQTARLAPISLKYYGLCLRKGPYKVRLHFAEIMFSNNQTFGSLGRRLFDVSIQGTVVLRDFNIMEEAEGAGNGIYRDFDASVNGSTLEIHLYWTGKGTNSIPEKGVYGPLISAIAVTPNFDPNPGLSVGGIIGIVIASCVVLVLILVLLRMKGYLGGKDLEDRELRELGTGYFSLRQIKAATNNFDSANKIGEGGFGPVYKGVLPDGSVIAIKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLSLIYEYLENNCLARALFDRNEQRLNLDWPTRKKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNAKISDFGLAKLDEDENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLHEQGNLLELVDPSLGSNYSEEEVMRMLNLALLCTNQSPTLRPPMSSVVSMLDGKIAVQAPTIKHDTMNPDMRFKAFEKLSLDSQSHVSAFSVDNQVQGSISLDGPWIDSSISLHSREETRDFSSSSKLLTGHQDLYSIHLN* 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 719036 726465 + Vvi19g66 Vvi19g66 781565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g66 935 Pfam Leucine rich repeat 94 151 IPR001611 GO:0005515
Vvi19g66 935 Pfam Leucine rich repeat 18 57 IPR001611 GO:0005515
Vvi19g66 935 Pfam Leucine Rich Repeat 214 234 IPR001611 GO:0005515
Vvi19g66 935 Gene3D Ribonuclease Inhibitor 180 284 IPR032675 -
Vvi19g66 935 Gene3D Ribonuclease Inhibitor 80 179 IPR032675 -
Vvi19g66 935 Gene3D - 315 508 - -
Vvi19g66 935 ProSiteProfiles Protein kinase domain profile. 574 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g66 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672|GO:0006468
Vvi19g66 935 PANTHER - 3 908 - -
Vvi19g66 935 Gene3D Ribonuclease Inhibitor 3 79 IPR032675 -
Vvi19g66 935 Gene3D Transferase(Phosphotransferase) domain 1 650 859 - -
Vvi19g66 935 Pfam Malectin domain 320 503 IPR021720 -
Vvi19g66 935 SUPERFAMILY L domain-like 5 233 - -
Vvi19g66 935 SUPERFAMILY Protein kinase-like (PK-like) 559 858 IPR011009 -
Vvi19g66 935 Pfam Protein tyrosine and serine/threonine kinase 577 845 IPR001245 GO:0004672|GO:0006468
Vvi19g66 935 CDD STKc_IRAK 580 847 - -
Vvi19g66 935 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 908 - -
Vvi19g66 935 SMART serkin_6 574 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g66 935 Gene3D Phosphorylase Kinase; domain 1 546 649 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76471 PF07714 PK_Tyr_Ser-Thr 1.00E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g66 - - vvi:100246997 1831.22