Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g663 ATGGCTATTGTCGACAAGAAGTCGCTTGAAGAAGAAGCCTGTATTCTTCGTTTCTGCAAAATAGTTCTGGGTTGGGACTATGTCCAACTCCTCAAAGAATCCAAGAAAAACAGCAGAAATATTGGTGATGGAAGTGCTCCGGGCCTGAGGAAGGTGAAGGATACATACACTGACATAGATGATTATCTCGCAACTTTCGAGCCTCTTCTTTTTGAAGAAGTAAAAGCCCAGATCGTGCAGGGCAGGGATGAAGAAGAGGTGTCAGAGTGGAAGTTTGCGATAGTCCGAGAATGCAGTGAGACTGATGGGTTTAGTATACCGGTGGTTGGTTATAAGGCAGAGGAGGGTGAATCAATTTCACAAAATGATCTATTACTGCTCTCAAAAACAAAGTTTCAAGAGGGTACAAGACTGCCAACTACATATGCTTTTGCATTAGCAGAGCATCGTCAGGGAGATTTACTTAGAGTAAGAATGTGGTTAGATGGAGAGGTCAAGGGAATTAATACAGATGAAGTTGTATCTTGTCCAAGGTTGTTGAGCATGCACTCTCTTATTGGTAATCTTATTAATGATCCAAATAGAGGTTTGTATATTCTGAAGATTTGCAGTTTATCAACTATTGTTCGTGAATATATTGGTTTACAATCCATTGGGTCTCTCCCCTTCAAGGACTTGATATTAACAGCGACTGACAGCAGTCCTAGTCCTGGTGAACAGTCCTGGAAAATTCCTAGACCATTGATGGAGTTTATTGAGACAAATCACAATGAATCTCAACTAGCAGCAATACATGCAAGTCTTTCACGTAAAGCCTTTGTCCTGATACAGGGTCCCCCAGGAACAGGAAAAACACAGACTATTCTTGGGCTTCTTAGTGCCATTTTGCATGCAACTCCAGCAAGAGTGCACTCCAGGGGTGGATTGAGTGAAATAAAACGTGGGCCATATTTACCTCTCCAGGAAAAATATGTTATGTGGGGACAAGCATCTCCATGGCTAACTGGTATCAATCCTAGAGATGAAATTGTGCCCAAGGATGGTGATGATGGTGTTTTCCCTACCACTGGAAATGAATTGAAACCAGAAATAGTTACTTCCAGTCGTAAATATCGTGTACGGGTACTGGTATGTGCTCCATCAAATTCTGCGCTTGATGAGATTGTGTTGCGCCTTCTAAATACTGGTGTTCGTGATGAAAATGACCATGCGTATAATCCTAAAATCGTGCGGATTGGTCTTAAACCACACCATTCTGTTCGGGCAGTCTCCATGGATTACCTTGTGGAACAAAAACTTTCCAGCATGAACTCTACTTCTGATAAACAGAAACATGGAGCTGCTGGAAGAGATAGGGACAGCGTTCGTTCATCAATTCTGAGTGAAGCGGCAATTGTCTTCTCCACCCTTAGCTTCAGTGGTTCAAGTCTTTTCAGTAAATTGAATAGTGGGTTTGATGTTGTCATAATAGATGAAGCTGCTCAAGCTGTGGAACCAGCAACTCTCGTTCCGCTGGCAAATGGATGCAAACAAGTATTTCTGCAGAAATTATACATATTTGATGTGGGACCTGAGTGGCGAGTGTCAAAGTTAGATATGGATGGGGTTCGCATGTCAATCCATGTATGTGGACCTCACATGTTCCTGATCTCCCTTGACTCAAACAATAAGTGGTTCTATACATTATGGCAGCTAGTTTATGCTCTTTTTCATGTACCGTGGGTGATGCATTCTTCTAAGAGGGGGGTGCTCCTTAGTTGGAATGGTGTCCCAATTGGCAAAAAAAGGAAAAAGGCTTGGAAAGTTGCTCCACTTTGCATTTTTTGGTCCATTTGGAGGGAAAGAAATAGGAGAGCTTTTGAGGACAGGGAAAGCTTAGATCAAACATTTAAAAGTTATTTTTTGTATTTATTTTGGGATTGGGTTAGAGTGTACATGGGGGATAGCATTTCTTCTTTGATAGATTTTGTGGATTGGTTAGGTTCCCCATAG 1992 41.82 MAIVDKKSLEEEACILRFCKIVLGWDYVQLLKESKKNSRNIGDGSAPGLRKVKDTYTDIDDYLATFEPLLFEEVKAQIVQGRDEEEVSEWKFAIVRECSETDGFSIPVVGYKAEEGESISQNDLLLLSKTKFQEGTRLPTTYAFALAEHRQGDLLRVRMWLDGEVKGINTDEVVSCPRLLSMHSLIGNLINDPNRGLYILKICSLSTIVREYIGLQSIGSLPFKDLILTATDSSPSPGEQSWKIPRPLMEFIETNHNESQLAAIHASLSRKAFVLIQGPPGTGKTQTILGLLSAILHATPARVHSRGGLSEIKRGPYLPLQEKYVMWGQASPWLTGINPRDEIVPKDGDDGVFPTTGNELKPEIVTSSRKYRVRVLVCAPSNSALDEIVLRLLNTGVRDENDHAYNPKIVRIGLKPHHSVRAVSMDYLVEQKLSSMNSTSDKQKHGAAGRDRDSVRSSILSEAAIVFSTLSFSGSSLFSKLNSGFDVVIIDEAAQAVEPATLVPLANGCKQVFLQKLYIFDVGPEWRVSKLDMDGVRMSIHVCGPHMFLISLDSNNKWFYTLWQLVYALFHVPWVMHSSKRGVLLSWNGVPIGKKRKKAWKVAPLCIFWSIWRERNRRAFEDRESLDQTFKSYFLYLFWDWVRVYMGDSISSLIDFVDWLGSP* 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8497126 8523598 - Vvi19g663 Vvi19g663 782162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g663 663 CDD DEXXQc_SETX 257 514 - -
Vvi19g663 663 PANTHER DNA2/NAM7 HELICASE FAMILY 13 514 IPR045055 -
Vvi19g663 663 Pfam AAA domain 449 514 IPR041677 GO:0004386
Vvi19g663 663 Pfam AAA domain 256 437 IPR041677 GO:0004386
Vvi19g663 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 514 IPR027417 -
Vvi19g663 663 PANTHER - 13 514 - -
Vvi19g663 663 Gene3D - 205 515 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g663 - - - vvi:100263445 942.954
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g663 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005742 1 5 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 0 3 1 1 3 2 2 39