Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g664 ATGGGAGACGTACCTGATGCAAAATCGAAGCCCTGCCACTCTCACCCGAAGGATGACGAATATCTCAGTTGCGTCATTCCCAAGCGCATAGCCCTCTTCGAGTCCATCAAATCTCAACAAATCTCTCACCGCCGATCCATTTCCGGTGACCCCATAAAGATAACTTTGCCGGATGGGACAGTGAAGGAAGGGAAGAAATGGGAGACTACGCCTTTTGATATCGCCAAAGAGATATCGAAAGGTTTAGCCTCCAATGCATTGATTTCTCAAGTGAATGGAGTTTTGTGGGACATGTCGAGGGCGCTGGAGGGCGACTGCGGGCTTAAGTTGTTCACATTCGATAGTGATGAAGGTCGGGACACTTTTTGGCATTCGAGTGCACACATTCTGGGACAGGCCCTTGAAATGGAATATGGTTGCAAGCTGTGCATTGGGCCCTGTACCACAAGAGGAGAGGGTTTCTATTATGATGCATTTTATGGTGAATTGGGCTTGAATGAAGATCACTTCAAGCAAATTGAATCAGGCGTGTTGAAAGCTGTTGGGGAAAAGCAACCTTTTGAGCGCATTGAAGTGTCAAGGAATCAGGCTCTTGAGATGTTTTCTGAAAATAGTTTTAAGATTGAAATCATCAATGACTTACCCGAAGACAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGACCCCATATACCAAATACATCTTTTGTGAAAGCATTTGCCTGTTTGAAGGCTTCATCAGCTTACTGGAGAGGAAATAGAGATCGTGAAAGTTTGCAAAGAGTTTATGGGATATCGTATCCTGATTCAAAACGATTGAAGGAATATATTGCTCGAATTGAAGAAGCCAAGAAATATGACCACAGATTGTTGGGTGTAAAACAGGAGCTTTTCTTCTGTCACCCACTTAGCCCTGGAAGTTGGTTCTTCCTTCCCCATGGGGGTCGAATTTACAACAAGTTGATGGAGTTCATAAAAGCTCAATACAGGGAAAGAGGTTACCATGAGGTTTTCTCACCAACTATGTATAATATGCAACTTTGGGAAACATCTGGTCATGCTGCTAATTACAAGGAAAATATGTTTGTATTTGAGGTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCATTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAGAACTTCCTCTTCGGCTTGCTGATTTTGGGGTCTTGCATCGAAATGAAGCCAGTGGTGCACTTACAGGTTTAACTCGTGTCAGGAGATTTCAGCAGGATGATGCACATATCTTCTGCAGGGAGTCCCAGATAAAGGATGAAGTCATGGGTGTCTTGGATTTCATCAATTATGCCTACAATATATTTGGCTTCACTTATGAGCTGAAGCTATCTACAAGGCCAGAGAAATACCTTGGAGATCTAGAAACATGGGAAAAAGCCGAGGCTGCGCTTACAGAAGCTTTGAATCAGAGTGGGAAGCCATGGGAGATAAATGAAGGGGACGGTGCATTTTATGGACCAAAGATTGACATTAGTGTTTCTGATGCATTAAATAGGAAATTCCAGTGTGCAACATTACAGCTGGACTTTCAGCTTCCTTCTCGTTTTGACTTGTCTTACTCAGCAGAGGATGAAGCTAAGAGGGAGAGACCTGTCATGATACACCGAGCCATCCTAGGGTCTGTTGAGCGTATGTTTGCTATACTTTTGGAGCACTACAAGGGGAAATGGCCCTTCTGGCTTAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTCAGGTAAGGGATCAGATTCATCAAGCTGGTTATTATGTTGATGTTGATACAACTGATAGAAAGATCCAGAAAAAGGTACGAGAAGCTCAGTTGGCCCAGTACAACTTTATATTGGTTGTTGGCGAGGAGGAAGCCAACACAAGACAGGTGAGTGTCCGGGTAAGAGACAAGGGAGACCATTCAGTTATGAGCATGGAAAACCTCCTCAGTTACTTCAAGAGTGAAACTGCAGCTTTTCATTAG 2061 43.62 MGDVPDAKSKPCHSHPKDDEYLSCVIPKRIALFESIKSQQISHRRSISGDPIKITLPDGTVKEGKKWETTPFDIAKEISKGLASNALISQVNGVLWDMSRALEGDCGLKLFTFDSDEGRDTFWHSSAHILGQALEMEYGCKLCIGPCTTRGEGFYYDAFYGELGLNEDHFKQIESGVLKAVGEKQPFERIEVSRNQALEMFSENSFKIEIINDLPEDKTITVYRCGPLVDLCRGPHIPNTSFVKAFACLKASSAYWRGNRDRESLQRVYGISYPDSKRLKEYIARIEEAKKYDHRLLGVKQELFFCHPLSPGSWFFLPHGGRIYNKLMEFIKAQYRERGYHEVFSPTMYNMQLWETSGHAANYKENMFVFEVEKQEFGLKPMNCPGHCLMFEHRVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVMGVLDFINYAYNIFGFTYELKLSTRPEKYLGDLETWEKAEAALTEALNQSGKPWEINEGDGAFYGPKIDISVSDALNRKFQCATLQLDFQLPSRFDLSYSAEDEAKRERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDQIHQAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEANTRQVSVRVRDKGDHSVMSMENLLSYFKSETAAFH* 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8525024 8558949 - Vvi19g664 Vvi19g664 782163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g664 686 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 220 269 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vvi19g664 686 Gene3D - 115 273 - -
Vvi19g664 686 SMART tRNA_SAD_4 220 269 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vvi19g664 686 SUPERFAMILY Class II aaRS and biotin synthetases 293 576 IPR045864 -
Vvi19g664 686 CDD ThrRS_anticodon 589 679 - -
Vvi19g664 686 Pfam Anticodon binding domain 591 680 IPR004154 -
Vvi19g664 686 Gene3D Bira Bifunctional Protein; Domain 2 275 582 IPR045864 -
Vvi19g664 686 Hamap Threonine--tRNA ligase [thrS]. 117 684 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi19g664 686 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 14 685 - -
Vvi19g664 686 Gene3D - 583 686 IPR036621 -
Vvi19g664 686 Gene3D - 50 111 IPR012675 -
Vvi19g664 686 PANTHER THREONINE-TRNA LIGASE 14 685 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi19g664 686 SUPERFAMILY TGS-like 52 113 IPR012676 -
Vvi19g664 686 CDD TGS_ThrRS 52 117 - -
Vvi19g664 686 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 373 579 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi19g664 686 Pfam TGS domain 52 112 IPR004095 -
Vvi19g664 686 CDD ThrRS_core 293 589 IPR033728 -
Vvi19g664 686 PRINTS Threonyl-tRNA synthetase signature 379 407 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi19g664 686 PRINTS Threonyl-tRNA synthetase signature 412 435 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi19g664 686 PRINTS Threonyl-tRNA synthetase signature 513 541 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi19g664 686 PRINTS Threonyl-tRNA synthetase signature 557 570 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi19g664 686 PRINTS Threonyl-tRNA synthetase signature 584 596 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi19g664 686 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 322 584 IPR006195 -
Vvi19g664 686 SUPERFAMILY Class II aaRS ABD-related 577 682 - -
Vvi19g664 686 TIGRFAM thrS: threonine--tRNA ligase 123 681 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi19g664 686 ProSiteProfiles TGS domain profile. 50 112 IPR004095 -
Vvi19g664 686 SUPERFAMILY ThrRS/AlaRS common domain 113 291 IPR018163 GO:0000166
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g664 K01868 TARS, thrS; threonyl-tRNA synthetase [EC:6.1.1.3] - vvi:100258303 1410.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g664 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003702 2 1 2 2 1 1 3 1 1 0 1 1 3 0 1 3 1 1 2 1 1 1 2 2 2 1 1 3 3 2 46