Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g666 ATGCTAGCAGACTGTGGTGTAGGGTTCGGGCGCAATGCCATTGGCGGTCGAGATGGTGAGCTTTACGTTGTCACTGATTCAGGCAACGACGACCCTGCCAACCCAATCCCAGGCACACTCAGACATGCTGTCATCCAATACGTGCCGCTGTGGATAGTGTTTGATCATGACATGGTCATCAACCTGAAGGAAGAGCTCATCATGAACTCTTACAAGACAATAGATGGGAGGGGATTCAACATCCAAATAGCCAATGGGGCCTGCATAACCATACAAAACGTGAGCAACATCATCATACATGGTGTCTACATACATGGTTGTGTGCCAACTGGGAACGCCATCGTGAGGGACAGGCCGGATCATTATGGGATGAGAGGGATGTCAGATGGGGATGGGATATCGATATTTGGAGGAACGGATATATGGATTGATCATTGTACCCTAGCTGATTGCTACGACGGACTCATTGATGCAGTGTATGGATCTAAATCAATAACCATCTCAAACAACTACATGTTGAATCACAATGAAGCCATGCTCATGGGGCATAGTGATGACTTCCTTGCTGACAAGAATATGCAGGTCACAATTGCCTTCAATTACTTTGGGGAAGGCCTAGTTCAAAGAATGCCCAGGTGCAGACATGGGTATTTCCATATTGTAAATAATGTATACACTGATTGGGAAATGTATGCAATTGGTGGAAGTGCCAATCCAACAATCAACAGCCAAGGAAATGTCTTCATTGCAAGGGATGACAATTCTACCAAGGAGGTGACCAAACGTGAAAGCCTCTTGGGATATGAAGAGTGGAAGGACTGGAATTGGAGATCAGATGGAGATTTGATGTTGAATGGTGCTTACTTTAGAGCTTCTGGAGAAGAAGCACCTGCAAGTTACTCAAAAGCATCGAGCATGGTAGCAAGACCAGCTTCACTTTTAACATATATCACTGCATCTGCTGGAGTTCTCAATTGTAAGATAGGCTATGCATGCTAA 999 45.05 MLADCGVGFGRNAIGGRDGELYVVTDSGNDDPANPIPGTLRHAVIQYVPLWIVFDHDMVINLKEELIMNSYKTIDGRGFNIQIANGACITIQNVSNIIIHGVYIHGCVPTGNAIVRDRPDHYGMRGMSDGDGISIFGGTDIWIDHCTLADCYDGLIDAVYGSKSITISNNYMLNHNEAMLMGHSDDFLADKNMQVTIAFNYFGEGLVQRMPRCRHGYFHIVNNVYTDWEMYAIGGSANPTINSQGNVFIARDDNSTKEVTKRESLLGYEEWKDWNWRSDGDLMLNGAYFRASGEEAPASYSKASSMVARPASLLTYITASAGVLNCKIGYAC* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8585324 8587301 - Vvi19g666 Vvi19g666 782165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g666 332 PRINTS Pollen allergen Amb family signature 5 22 IPR018082 -
Vvi19g666 332 PRINTS Pollen allergen Amb family signature 29 54 IPR018082 -
Vvi19g666 332 PRINTS Pollen allergen Amb family signature 65 81 IPR018082 -
Vvi19g666 332 PRINTS Pollen allergen Amb family signature 129 150 IPR018082 -
Vvi19g666 332 PRINTS Pollen allergen Amb family signature 209 228 IPR018082 -
Vvi19g666 332 PRINTS Pollen allergen Amb family signature 231 250 IPR018082 -
Vvi19g666 332 PRINTS Pollen allergen Amb family signature 274 298 IPR018082 -
Vvi19g666 332 PRINTS Pollen allergen Amb family signature 303 326 IPR018082 -
Vvi19g666 332 SMART amb_all 57 254 IPR002022 -
Vvi19g666 332 Pfam Pectate lyase 64 248 IPR002022 -
Vvi19g666 332 Gene3D - 1 325 IPR012334 -
Vvi19g666 332 PANTHER PECTATE LYASE 18-RELATED 1 329 IPR045032 GO:0030570
Vvi19g666 332 SUPERFAMILY Pectin lyase-like 3 332 IPR011050 -
Vvi19g666 332 PANTHER PECTATE LYASE 21-RELATED 1 329 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g666 K01728 - vvi:100249765 695.271