Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g669 ATGTCACTTTCAATAGATTCATCATCGCAGGTTCTTGAAAATGGATATGAACATGCTGAACTACTCTCCGGGAATAATGATGAACATGAAGGTGTCATGGTGAACATGGAAAAGCCTATGGACTCCAAGGTCTTTCTCACTGCACTTAGAGCTTCGATATCGCTGTGGAGGAAACAGGGCAAAAGGGGTGTTTGGATTAAATTGCCCATTGGCCTTGCAAATCTTATTGAAAGTGCAGTAAAGGAGGGATTTCATTATCATCATGCTGAGCCAGATTACCTGATGCTTGTTCATTGGATTTCTGAGTCCACCACTAGTACTATCCCTGCAAATGCCACACACCGAGTAGGCATTGGTGCCATTGTCATGAATGATAAAAGAGAGCTGCTTGTGGTCCAGGAAAAGAGCGGGAAGTTAAAAGGAACGGGAATATGGAAGATCCCTACTGGAGTAGTTGATGCGGGTGAGGATATCTTCAAGGCAGCAGTGAGAGAAGTAAAAGAAGAGACAAATATTGACACAGAATTTGTGGAAATCCTAGGATTCAGGCAAACCCACAAGTCATTCTTTGAAAAATCGGATTTGTTCTTCCTTTGCATGATGCGCCCACTCTCCTTTGATGTTCAGAAGCAAGAATTAGAGATTGACGCAGCCAAGTGGATGCCATTCGAGGAGTATACAGCTCAACAAATTGTCGAGAAACCTGGATTTTACAAGTGCATCACAGACATATGCTTAGCAAAGGTAGACGGGGACTACATCGGTTTCTCTCCAAGACTTGTAAAATCAAGTTTTACCGATCAACTGAGTTACTTTTATTTGAACGAACAAGATTCTAACAGTTCTTAA 849 42.05 MSLSIDSSSQVLENGYEHAELLSGNNDEHEGVMVNMEKPMDSKVFLTALRASISLWRKQGKRGVWIKLPIGLANLIESAVKEGFHYHHAEPDYLMLVHWISESTTSTIPANATHRVGIGAIVMNDKRELLVVQEKSGKLKGTGIWKIPTGVVDAGEDIFKAAVREVKEETNIDTEFVEILGFRQTHKSFFEKSDLFFLCMMRPLSFDVQKQELEIDAAKWMPFEEYTAQQIVEKPGFYKCITDICLAKVDGDYIGFSPRLVKSSFTDQLSYFYLNEQDSNSS* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8601630 8609299 - Vvi19g669 Vvi19g669 782168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g669 282 ProSiteProfiles Nudix hydrolase domain profile. 113 243 IPR000086 -
Vvi19g669 282 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 72 90 IPR003293 -
Vvi19g669 282 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 111 129 IPR003293 -
Vvi19g669 282 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 199 223 IPR003293 -
Vvi19g669 282 PANTHER NUDIX HYDROLASE RELATED 10 281 IPR003293 -
Vvi19g669 282 SUPERFAMILY Nudix 80 230 IPR015797 -
Vvi19g669 282 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 115 243 - -
Vvi19g669 282 CDD Nudix_Hydrolase_12 114 245 - -
Vvi19g669 282 Pfam NUDIX domain 114 228 IPR000086 -
Vvi19g669 282 ProSitePatterns Nudix box signature. 150 171 IPR020084 GO:0016787
Vvi19g669 282 PANTHER NUDIX HYDROLASE 2 10 281 - -
Vvi19g669 282 Gene3D - 19 105 - -
Vvi19g669 282 Pfam Nudix hydrolase domain 22 100 IPR040618 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g669 - - - vvi:100256580 569.311
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g713 Vvi19g669 ECH
Vvi12g712 Vvi19g669 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g669 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005596 0 7 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 0 1 3 4 1 38