Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g672 ATGGAGCGTGATGATGATCAGTTTCATGGATATCGCAGAAAGATCCCAGAAAACTCATCCACCTCTGCTCTGAATCCTGGCGCCACCTCTTCTAATCCCATCGAAACCACCGCCGGCGTGGGTCAGAAGCAGCTGCCCATGGAGCAGTACATGCCCATAGCAAACCTGACGCGCGTCATGCGCCGTGTCCTACCTGCTCATGCTAAGATCTCCGACGATGCCAAGGAGACCGTCCAGGAATGTGTCTCCGAGTTCATCAGCTTCATAACTAGCGAGGCTAATGACAGGTGCCACCATGAGCTGCGGAAAACCATCACCGCTGAGGATGTCATCGCCGCCATGAGCAAACTGGGATTTGACGACTACATTGACCCTCTCACTCTCTACCTTCACCGCTATCGCGAGTCGGAAAACGAACGTGACCGTATGCCTCTGAGGCGTGGTAGGGAGTATGGTTCGCTGGGGGCCGCAGCAAATTATGGGCCACCGCCACCGCCATGGACGACATTGCACATTGGGAGCCAACAGGGGCTGTATGACGCTGCACCCATAGTTACACGCGACTACTTCAAGGAAGGGTCGAGTGCTGGCGGCAGCACCTCTTCTCGCCTTCCTCCTGAGTACAAGTAA 630 55.4 MERDDDQFHGYRRKIPENSSTSALNPGATSSNPIETTAGVGQKQLPMEQYMPIANLTRVMRRVLPAHAKISDDAKETVQECVSEFISFITSEANDRCHHELRKTITAEDVIAAMSKLGFDDYIDPLTLYLHRYRESENERDRMPLRRGREYGSLGAAANYGPPPPPWTTLHIGSQQGLYDAAPIVTRDYFKEGSSAGGSTSSRLPPEYK* 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8666962 8668364 + Vvi19g672 Vvi19g672 782171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g672 209 Gene3D Histone, subunit A 42 152 IPR009072 GO:0046982
Vvi19g672 209 ProSitePatterns NF-YB/HAP3 subunit signature. 81 97 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi19g672 209 SUPERFAMILY Histone-fold 49 144 IPR009072 GO:0046982
Vvi19g672 209 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Vvi19g672 209 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Vvi19g672 209 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Vvi19g672 209 MobiDBLite consensus disorder prediction 1 43 - -
Vvi19g672 209 MobiDBLite consensus disorder prediction 14 43 - -
Vvi19g672 209 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 30 179 - -
Vvi19g672 209 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 114 IPR003958 -
Vvi19g672 209 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 30 179 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14434 PF00808 CBFD_NFYB_HMF 1.00E-22 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g672 K08065 - vvi:100256650 424.091