Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g673 ATGGAGACTGATGGTGATCAGTTTCATGTCTACCGCAGAAAGTTCCCACCAAACTCATCCAACTCTGCTCTCACTTTGGGTTCCCGCTCCTCCAACCCCATCAACACCATGGCCGGCGAGGGCCAACAGCAGGGTCGGCGAGAGCAGGAGCATTATATGCCCATGGCACATTTGACACGCGTCATGCGTCGTGTCCTCCCTGCCCATGCTCAGATCTCCGACCAGGCAAAGGAAAGCATCCAGGAATGCGTTTGCGAGTTCATTAGCTTCATAACTAGTGAGGCTAATGACAGGAGCCACCATGAGCTGCGGAAAACCATCACCGGTGAGGACATCATAGCTGCCATGGGGAAGCTTGGGTTTGACGACTACATTGAGCCCCTCACTCTGTACCTACATCGCTACCGCCAGGCAGAGAATGAGCGTGACGGCCGTCTGCCTCTTGGGGGTGCCATGGACTATGGTTCCCTTGGTGCCACACTGAGTTATGGGCCACCACTCCCGCCGCCGCCGCCCCAGACTTTGAACATGGGGAACCAAGAGGGGTTGCAAGATGCTGCTGCTATAGTTACTCATAACTACTTCGAGGAAGAGGCGGGTGGTGCCGGCGGTAGCACCTCTTCTAGGTACCCTCGCGAAGACAAGTAA 648 55.71 METDGDQFHVYRRKFPPNSSNSALTLGSRSSNPINTMAGEGQQQGRREQEHYMPMAHLTRVMRRVLPAHAQISDQAKESIQECVCEFISFITSEANDRSHHELRKTITGEDIIAAMGKLGFDDYIEPLTLYLHRYRQAENERDGRLPLGGAMDYGSLGATLSYGPPLPPPPPQTLNMGNQEGLQDAAAIVTHNYFEEEAGGAGGSTSSRYPREDK* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8672302 8673839 + Vvi19g673 Vvi19g673 782172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g673 215 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Vvi19g673 215 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Vvi19g673 215 PRINTS CCAAT-binding transcription factor subunit A signature 118 136 - -
Vvi19g673 215 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 28 156 - -
Vvi19g673 215 SUPERFAMILY Histone-fold 49 145 IPR009072 GO:0046982
Vvi19g673 215 MobiDBLite consensus disorder prediction 14 43 - -
Vvi19g673 215 MobiDBLite consensus disorder prediction 1 49 - -
Vvi19g673 215 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 53 116 IPR003958 -
Vvi19g673 215 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 28 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi19g673 215 MobiDBLite consensus disorder prediction 195 215 - -
Vvi19g673 215 Gene3D Histone, subunit A 39 146 IPR009072 GO:0046982
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14435 PF00808 CBFD_NFYB_HMF 3.60E-19 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g673 K08065 - vvi:100251442 415.616