Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g674 ATGGATATTCCGCTGCCATTGGAAAAATTATCTTTGGAATCCATAGATGAAGACAGATCTCTGGAGACTACCAATAGGGAGAAGATGTATGTAGCTCTAGTAGCAACTGGAAGTTTCAATCCTCCTACTAATATGCATTTACGCATGTTTGAGCTAGCAAGAGATGCATTGAGGTCAGAAGGTTATTGTGTTATTGGGGGTTATATGTCACCAGTGAATGATGCATACAAGAAAAGGGGCCTGATATCTGCTGAACATCGTATTCAGATGTGTGATCTTGCCTGCAAAAGTTCTGAATTCATAATGGTGGATCCTTGGGAGGCAAATCAGAGTACCTTCCAACGTACATTGACGGTCTTATCTAGAATTAAGTGTTCTTTGTGTGAGAATGGACTTATACCCAGAGAATCTCTCAAGGTCATGCTTGTCTGTGGTTCTGATCTGCTCGAGTCTTTTGGCATTCCTGGATTTTGGATTACTGAGCAGGTAATGGCTATCTGTAGAGACTATGGTGTGGTGTGCATTCGCCGAGAAGGGCAAGATGTTGAGAAAATTATATCTGATAACAATATCTTGAATGAAAATAAGGGAAACATCATAGTTGTGGATGATCTTGTGCCAAACCAGATCAGCTCGACGAGAGTAAGGGAATGCATTTCAAGGCAGTTGTCAGTGAAATATCTGATGGAAGATAGAGTGATTGATTATATCAAACGACATCATCTTTACTCCAACTCATCAGAAAGGTAA 750 40.4 MDIPLPLEKLSLESIDEDRSLETTNREKMYVALVATGSFNPPTNMHLRMFELARDALRSEGYCVIGGYMSPVNDAYKKRGLISAEHRIQMCDLACKSSEFIMVDPWEANQSTFQRTLTVLSRIKCSLCENGLIPRESLKVMLVCGSDLLESFGIPGFWITEQVMAICRDYGVVCIRREGQDVEKIISDNNILNENKGNIIVVDDLVPNQISSTRVRECISRQLSVKYLMEDRVIDYIKRHHLYSNSSER* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8679587 8686228 - Vvi19g674 Vvi19g674 782173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g674 249 CDD NMNAT_Eukarya 31 243 IPR045094 GO:0000309|GO:0004515|GO:0009435
Vvi19g674 249 TIGRFAM TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 35 243 IPR005248 GO:0009435|GO:0016779
Vvi19g674 249 PANTHER NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE 17 245 - -
Vvi19g674 249 Pfam Cytidylyltransferase-like 34 217 IPR004821 GO:0003824|GO:0009058
Vvi19g674 249 PANTHER NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE 17 245 - -
Vvi19g674 249 Gene3D HUPs 28 249 IPR014729 -
Vvi19g674 249 SUPERFAMILY Nucleotidylyl transferase 29 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g674 K06210 NMNAT; nicotinamide mononucleotide adenylyltransferase [EC:2.7.7.1 2.7.7.18] - vvi:100251521 501.516
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g674 . . . . Bpe09g00125 . . Bma13g01117 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1223 Cone15ag1244 . Csa03g00424 . Cme06g02770 . . . Bda12g00966 . . . . . . . . . . . Cpe14g00786 . Bhi11g00477 . . . . . . . . . . . . . . . Chy06g01889 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004688 3 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 2 1 1 1 1 2 5 1 40