Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g676 ATGGATTCAAGAAAGCTTCTTGTTTTCTTGCTTTTCACGTTCTTCAATTTCTCCGACCCACCTCTAGTGGTATCAGCCCAGAATGTGGATTTTGATTTCTCCTCGTTCACTCTCCGAAACTTCACTCTCCTCGGGGACTCCTACCTCCGAAACGGCGTAATTGGCCTCACCCGAAACCTCGGGGTCCCCTCCTCCAGCTCCGGAACCGTTATCTGCAACGCCCCGATCGCATTTTTCGATTCTGAATCGAATACCACTGCCTCTTTCTCCACAAGATTCTCCTTCTCTATCACCAATGTCAATCCGAGCTCCTACGGCGACGGATTGGCCTTTTTTCTTTCGCCTGAAAATGAGACTCTGGGCAGCCCTGGAGGCTATCTGGGTCTTGTGAATTCCTCCCAATTAACCAAGAACAGGTTTGTTGCAGTGGAATTCGATACCCGGCTCGATCCGCATTTCAATGATCCCAATGACAACCATGTGGGGTTGGATATTGACAGCTTGAATTCAATGAAGACTGCCGATCCAGTCTTGGATGAGAATATTGACCTGAAAAGTGGAAAGTCGATCACGGCTTGGATTGAGTACAAGAATGATCAGATGAAGCTCAAGGTGTTCTTGAGTTCTTCGAGGTCTAAGCCTGAAAGGCCAGTCCTGATTGTGGATATTGACCTTTCTGAGTATCTGAAGGAGTTGAAGTATGTGGGGTTTTCAGCCTCTACAGAGGGGAGCACCGAGCTGCATCTGATTGAGAATTGGAGCTTCAAGACTTTCGGGTTGGTCCCTGCACCGCCACGGCTGCATTTTCCGCCTCACAACGTCTCAGATAATACAGTGATGATACCCCCACCAAGTGCGGTATCTGATTCAGGGAATAAAGGCCATAAGAGGCTTGGTTTGGGGTTCGGGATTGCTGGGCCAGTGTTCTTTTGCATAGTTCTTTCGGTATTTGGTTATGTTTCCATGAAGAAATGGAGGGGGATGAGATGGGAGAAGAGCTTCAAAGCAGATATTCTTGCTGGGCCAAGAGAGTTTAGTTACAAAGAGCTGAAGGGGGCGACAAAAGGATTTCATTCTAGCAGGATCATTGGCAATGGTGCATTCGGTACTGTTTACAAGGCATTTTTTATCACAACAGGGACCATTTCTGCAGTGAAAAGATCAAAGCATTCTCATGAAGGTAAAAGCGAGTTCCTTGCTGAGTTATCAATTATAGCTTGTTTAAGGCATAAGAATTTAGTTCAGCTTCAAGGTTGGTGTGTTGAGAAGGGTGATCTATTGCTTGTTTATGAATTTATGCCTAATGGCAGCCTTGATAAGATGCTGTATCAAGAGTCCGAGGAAGGAACCTTACTGAAATGGTCTCATAGATACAACATTATTGTTGGGATGGCATCTGTTCTCACATACCTGCATCAGGAATGTGAGCAGCAAGTCATCCACAGAGACATAAAAACCAGTAACATAATGCTTGATGGAAACTTCAATGCTAGGCTTGGAGATTTCGGGTTGGCAAGGCTCATGGATCATGATAAAAGTCCAGTTTCAACTCTGACTGCTGGAACTATGGGATACCTTGCCCCGGAGTATCTGCAGTATGGGAAAGCTACTGAGAAAACAGATGTTTTCAGCTATGGTGTGGTTATACTTGAAGTGGCTTGTGGAAGGAGGCCAATTGAGAAAGACACAGATAGTCAGAAAATGATGAATTTGGTTGATTGGGTTTGGGGATTGTATTCTCAAGGCAACATCCTTGAAGCTGCTGACAAACGGTTGAATAGGGAGTTCAAGGAGGAAGAAATGAGAAAGCTTTTACTTGTGGGCTTGAGCTGTGCAAACCCAGATTGTAATGTGAGGCCTTCTATGAGGAGAGTCCTTCAGATCCTTAATGATGAGGCAGAGCCTTTACTTGTCCCCAGGATGAAACCAAGTCTCACTTTCTCATTAAGCTTGCCTCTCAGTATCGATGACATTTTGCATTGCTTTTCTGCAGAAGAGTTGGTCATGGCTTTCCTTTTAGCAACAAAAATCTGCAACTCTGCTTTCTTTACGTCTCTTTTAGTCTCCACTGCTGTTGTCTCTGTGTCGTCGTACACCTTCCAGGTGGGGGGTGAGGGAGGTTGGACCAAACCTACAGGAAATGAGACAGAAACTTACAATGGCTGGGCTGAAAAGAACAGGTTCCATGTCGGTGATTCTGTGTATTTCAAGTACCAGCAGGACTCAGTGCTGGTAGTGAACTACACAGATTACACAAACTGCAACACCTCAAACCCCATCTCCAAATTCGAAGATGGAAACACACTCTTCCGATTTGATGGCCATGGGGTTTTCTATTTCATCAGTGGCCAGCCTGATCACTGCCAGTCAGGTCAGAAACTGATCATTCGAGTAATGGCCCAATCCGAAGTCAAGCCTCCAGAACCAGCACCTTCACCTAAGACTGATGGATCTGCATTTTCACCTGAAGCCGCTTATGTATCTGCACTTCCGCCTAAAGCCGGTGGTGGGAATGACCGGAGCTCTTTCAACTGGGTGCCACCGCCGTCGCTAAATTCCACCACCAAGTTGTCTATAGCATCATATTTTGTGACCGCCCTTGGCGGAGTCTGGGTCATTCTCTATTTGTTCATTTAA 2637 45.85 MDSRKLLVFLLFTFFNFSDPPLVVSAQNVDFDFSSFTLRNFTLLGDSYLRNGVIGLTRNLGVPSSSSGTVICNAPIAFFDSESNTTASFSTRFSFSITNVNPSSYGDGLAFFLSPENETLGSPGGYLGLVNSSQLTKNRFVAVEFDTRLDPHFNDPNDNHVGLDIDSLNSMKTADPVLDENIDLKSGKSITAWIEYKNDQMKLKVFLSSSRSKPERPVLIVDIDLSEYLKELKYVGFSASTEGSTELHLIENWSFKTFGLVPAPPRLHFPPHNVSDNTVMIPPPSAVSDSGNKGHKRLGLGFGIAGPVFFCIVLSVFGYVSMKKWRGMRWEKSFKADILAGPREFSYKELKGATKGFHSSRIIGNGAFGTVYKAFFITTGTISAVKRSKHSHEGKSEFLAELSIIACLRHKNLVQLQGWCVEKGDLLLVYEFMPNGSLDKMLYQESEEGTLLKWSHRYNIIVGMASVLTYLHQECEQQVIHRDIKTSNIMLDGNFNARLGDFGLARLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATEKTDVFSYGVVILEVACGRRPIEKDTDSQKMMNLVDWVWGLYSQGNILEAADKRLNREFKEEEMRKLLLVGLSCANPDCNVRPSMRRVLQILNDEAEPLLVPRMKPSLTFSLSLPLSIDDILHCFSAEELVMAFLLATKICNSAFFTSLLVSTAVVSVSSYTFQVGGEGGWTKPTGNETETYNGWAEKNRFHVGDSVYFKYQQDSVLVVNYTDYTNCNTSNPISKFEDGNTLFRFDGHGVFYFISGQPDHCQSGQKLIIRVMAQSEVKPPEPAPSPKTDGSAFSPEAAYVSALPPKAGGGNDRSSFNWVPPPSLNSTTKLSIASYFVTALGGVWVILYLFI* 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8704991 8712705 + Vvi19g676 Vvi19g676 782175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g676 878 ProSitePatterns Protein kinases ATP-binding region signature. 363 386 IPR017441 GO:0005524
Vvi19g676 878 ProSiteProfiles Protein kinase domain profile. 357 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g676 878 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 265 IPR013320 -
Vvi19g676 878 Gene3D Transferase(Phosphotransferase) domain 1 433 645 - -
Vvi19g676 878 SMART serkin_6 357 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g676 878 SUPERFAMILY Cupredoxins 697 799 IPR008972 -
Vvi19g676 878 Pfam Protein kinase domain 357 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g676 878 PANTHER - 22 649 - -
Vvi19g676 878 Gene3D - 697 804 IPR008972 -
Vvi19g676 878 SUPERFAMILY Protein kinase-like (PK-like) 340 652 IPR011009 -
Vvi19g676 878 Pfam Plastocyanin-like domain 708 792 IPR003245 GO:0009055
Vvi19g676 878 CDD OsENODL1_like 698 799 IPR041846 -
Vvi19g676 878 ProSitePatterns Legume lectins beta-chain signature. 141 147 IPR019825 -
Vvi19g676 878 Gene3D Phosphorylase Kinase; domain 1 321 432 - -
Vvi19g676 878 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 22 649 - -
Vvi19g676 878 Pfam Legume lectin domain 29 257 IPR001220 GO:0030246
Vvi19g676 878 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Vvi19g676 878 ProSiteProfiles Phytocyanin domain profile. 698 800 IPR003245 GO:0009055
Vvi19g676 878 CDD STKc_IRAK 363 630 - -
Vvi19g676 878 Gene3D - 26 260 - -
Vvi19g676 878 CDD lectin_legume_LecRK_Arcelin_ConA 29 259 IPR001220 GO:0030246
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76472 PF00069 Pkinase 2.70E-52 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g676 - - vvi:100241177 1303.5