Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g677 ATGAAGCAATGGCCTCTGCTTCGTTCTCTCTCCGAAAGCCTAACCCGAACCCTAGCTGCCCATTCTGCTTACACTCTTCGCTTCCTCTCCTCCGCCACAGCCTCACCAACCTTTGCTCTCAAGAACGTTACCAAGTCCAACTTCGAGTCCTCCCTCGCCGACCTCCGGCGCCATGTTCGCGACGCCGATTTCGTGGCCATTGACCTCGAGATGACCGGCGTCACCAGCGCTCCTTGGAGAGAATCCTTCGAGTTTGATCGGTTTGATGTTCAGTATCTCAAGGTTAAGGACTCGGCGGAGAAGTTCGCTGTTGTCCAGTTCGGTGTTTGTCCCTTCCGGTGGGACAGTTCTAGGCATTGCTTCGTGGCTCATCCGCACAATTTTTATGTTTTTCCTCGGCAAGAGCTTCCAGTTGATGGCCCTTCATATGAGTTCCTCTGCCAGACAACGTCAATTGACTTCCTAGCTAAATACCAGTTTGATTTCAATGCCTGTATATATGAAGGTATATCTTATTTATCCAGAGAACAAGAGAATGAAATGCTGAGATGCCTAAATTCCGAATGTGATGATGAGATGTCACTATTGTGGCGTAACATGAAAGAAGTTAGAGACACGCCACTGGTTAGTGTGGCAGATGTTCTCTTCAGCGAAAGAATGAAGAACAGGTTCAATGAATGGCGCAAGGAGTTATTACAGGATAGAAAGGGAGGGTCTCAATTTCTGGAGACCTCAAATGACATGAAGCAACAATTTCAAACTATTTTCTTTAAGATGCGACCAGCTCTTATATTGAATGGGTTCACTGCTCATCAGCTGAGATTGATTCAATTGGTCATAAAGAAGCATTTTAAAGATCTTGTTTACATCCGTTCAAGTGGCGATGGTTCCTACTCAGAACTAATAGTATATATAGACTCTGACAATGACAAGAACCTACTTATGAAAGAGGTGAAGGATGGGCTTCGCAGAGAAGCAGAGATGAAAATTAAAACTGCGGTTGGGTTCCGGCATGTCATTGACCTTCTTTCCTCTGAACAGAAGTTGATTGTTGGCCACAATTGCCTTTTAGATATTGCACACATATACAACAAATTCTTTGGACCTCTTCCATTGACTGCTGAAGATTTTGTCTCCTCTATTCACAAGTACTTCCCATACATGATTGATACAAAAATACTCTTGAATACAAATAATGTACTTAAGCATCTGATGAAGAATGGCAGCACATCACTATCGAAGGCATTTGCCTCATTGTGTCCGCAAATTGCTTCCAGTTCCAAAAACTCGGGTTTGGCTTTCCAGCCATGGGTTGAAGTTGAGGTGCAAGTGGATGATATGAGGTCCTCCAACTGGAACTCCGGAGCCAAGCATGAAGCTGGCTATGATGCTTTTATGACTGGGTGTGTCTTTGCTCAGGCATGCAGTAATTTAGGAATTGATTTCAAGAAACATTCTTCCTCAGCAAACTTGGCCCACAATAAAAATCTCCAGAAGCATGTCAATCACCTCTACTTCAGCTGGGTTAATGGAGACATTATTGATCTCGGTACTGGAAACAGAATTGCGGCAACTACAGTTTGTTATAACCTGAAAAGGCGGTACCCAAAGATTTTGTTCTCTAATATTGTCATAGTATGGGGATTTCCTTCCCAACTCTCATCAAAGAAGATAAGAGAGTGTATCTCTAAAGCTTTTGGTCCAATTTCTGTTACTACCATCTATCACTTGGATGAAACTGCAGTTTTTGTTCAATTCAGCAAGCCAGAGTTGGTGGCTGACTTTCTGGTTTTAAAAGAAACCTTAGAGACAATTCAAGATCCAATCTCAGTTTTGCATCCCCTCTCAGTACTGTTGGAAGGTGGAAACACTTGTGCTGCCAGCTATGAAACTTATAAAGAGATTTGTAGCTCACCCATCTCCAAAGTCATGTTTGCAGATCAGGCCAAGGCTGTTGGCATTAAATGGAAAACCAAATTAATTGAATCAAAAGAAAAGGTGAAGACTCAAGAAGACGAAAGTTTCAGCAAAGAAAATGGAGCCACTGATGCTGCTTCTGATCCTGCTGATAAAAGCAAGACCAGGAAGATCGAAGATGTGATAGATAATCTTTCAGATGACCGTATCTCAGCATTTTTCTGTACATGA 2148 42.78 MKQWPLLRSLSESLTRTLAAHSAYTLRFLSSATASPTFALKNVTKSNFESSLADLRRHVRDADFVAIDLEMTGVTSAPWRESFEFDRFDVQYLKVKDSAEKFAVVQFGVCPFRWDSSRHCFVAHPHNFYVFPRQELPVDGPSYEFLCQTTSIDFLAKYQFDFNACIYEGISYLSREQENEMLRCLNSECDDEMSLLWRNMKEVRDTPLVSVADVLFSERMKNRFNEWRKELLQDRKGGSQFLETSNDMKQQFQTIFFKMRPALILNGFTAHQLRLIQLVIKKHFKDLVYIRSSGDGSYSELIVYIDSDNDKNLLMKEVKDGLRREAEMKIKTAVGFRHVIDLLSSEQKLIVGHNCLLDIAHIYNKFFGPLPLTAEDFVSSIHKYFPYMIDTKILLNTNNVLKHLMKNGSTSLSKAFASLCPQIASSSKNSGLAFQPWVEVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCVFAQACSNLGIDFKKHSSSANLAHNKNLQKHVNHLYFSWVNGDIIDLGTGNRIAATTVCYNLKRRYPKILFSNIVIVWGFPSQLSSKKIRECISKAFGPISVTTIYHLDETAVFVQFSKPELVADFLVLKETLETIQDPISVLHPLSVLLEGGNTCAASYETYKEICSSPISKVMFADQAKAVGIKWKTKLIESKEKVKTQEDESFSKENGATDAASDPADKSKTRKIEDVIDNLSDDRISAFFCT* 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8712743 8718835 - Vvi19g677 Vvi19g677 782176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g677 715 MobiDBLite consensus disorder prediction 667 697 - -
Vvi19g677 715 SUPERFAMILY Ribonuclease H-like 41 486 IPR012337 -
Vvi19g677 715 Pfam CAF1 family ribonuclease 43 471 IPR006941 -
Vvi19g677 715 Gene3D - 237 520 IPR036397 GO:0003676
Vvi19g677 715 Gene3D - 42 231 IPR036397 GO:0003676
Vvi19g677 715 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 38 660 - -
Vvi19g677 715 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 38 660 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g677 K01148 PARN, PNLDC1; poly(A)-specific ribonuclease [EC:3.1.13.4] - vvi:100258377 1421.37
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g677 . . . . Bpe09g00121 . . Bma13g01121 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1229 Cone15ag1253 . Csa03g00422 . Cme06g02768 . . . Bda12g00970 . . . . . . . . . . . Cpe14g00784 . Bhi11g00474 . . . . . . . . . . . . . . . Chy06g01891 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009803 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 31