Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g678 ATGGCGCAAGTGCTCTCCTTTGGATTGAGGATTCGGTGTTCGGACGCCCGCAGAACTTCTTCTAAGCCTTTGAAGGTTGCGAAGACGAGGCCCAACACGGCAATTCCAACTCGGTCAACAGGTACTCGTCGGAATGCCAACAGAACATACGGTGTCAATTTGGAGATTTCCCCTCATAGAGCTGTCTCTGCAGTGAGATTGATGAGAATAGAGCTGGGCGGCGCTTTTGCTGACCTCTTGAACGAGAGAGGAAAGGGTTCTGGTGATAATGAGATGGGTTATGTTGAAAGAACTCTTGGTTTTCGAACCCGAGATTTGGATGATCGGGACCTTAGATTGGTTACGGATATTGTTGGAGGTTCTATTCGTTGGCGAAGGTACCTTGACCATCTGATTGTTTCGCTATGCCATGATTCAAAAACATTTAGAAGCATGGAACCTCTTCTCTTACAGATTCTCCGAATTGGTTTCTACGAGATTGTCAATCTAGATATGCCACCATATGCTGTTGTAGATGAGAATGTGAGGCTTGCAAAGGTTGCCCTTAGACCAGGTGCTGGTAACATGGTCAATGCAATTCTCCGGAAACTAGTTTTGCTTAAGGAAAAAAACTCCCTTCCTTTACCTAAACTTGAAGGCGATGATCGTGCACAAGCACGTGCTCTTGCAACCCTTTATTCCCATCCAGTTTGGATGGTACGAAGATGGACAAAGTATCTTGGGCAAGAAGAAGCTATTAAATTGATGATGTGGAACAACAGTGAGCCCAGTTTTAGTCTGAGAGCAAACAGCGGAAAGGGGTTTACAAGAGCTGATCTTGTGATGCGGCTTAAAATGTTGAAGGTTCCACATGAGCTTTCTCCACATTTGGATAATTTTGTCCGCATCAGAACTGGGATGCAGATTGTCATACAAGCTCAATTACTGAAAGAAGGTTTATGCTCAGTCCAGGATGAAAGTGCAGGTCTGGTAGTTTCTGTCGTGGATCCACAACCTGGTGAGAGCATTATTGATTGCTGTGCTGCTCCTGGAGGAAAGACCATTTTTATGGCATCCTGTTTAAGTGGCCAAGGTATGGTGCATGCAATTGACATTAACAAAGGTCGGTTGAGAATCGTTAAAGAGACAGCCAAGTTGCTCCTAGTTGATGATGTTATCACTACCGTTCATGCTGATCTTTGTACCTTTGCCAAAAATAATCCGGTGAAGTCTGATAAGGTTTTGCTGGATGCTCCATGTTCTGGACTGGGTGTTCTCTCAAAGAGAGCGGACTTGCGTTGGAATAGGAGTTTAGAGGATATGGAACAACTCAAGAATTTACAGGATGAGCTGTTAGATGCTGCTGCCATATTGGTTAAGCCTGGTGGAGTATTAGTATACAGCACATGTTCCATTGATCCCGAAGAGAATGAAGAGAGAGTGGCTGCATTTCTTCAGAGGCACCCGGAATTCAGCATCGATCCTGTTGGCAGATATGTTCCATCCGATTTTGTAACAGAGGGTGGTTTTTATTTCTCCAACCCAGTCAAGCATGCACTAGATGGTGCTTTTGCTGCCCGTTTGGTTCGATCCTCATAA 1578 44.8 MAQVLSFGLRIRCSDARRTSSKPLKVAKTRPNTAIPTRSTGTRRNANRTYGVNLEISPHRAVSAVRLMRIELGGAFADLLNERGKGSGDNEMGYVERTLGFRTRDLDDRDLRLVTDIVGGSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVVDENVRLAKVALRPGAGNMVNAILRKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMMWNNSEPSFSLRANSGKGFTRADLVMRLKMLKVPHELSPHLDNFVRIRTGMQIVIQAQLLKEGLCSVQDESAGLVVSVVDPQPGESIIDCCAAPGGKTIFMASCLSGQGMVHAIDINKGRLRIVKETAKLLLVDDVITTVHADLCTFAKNNPVKSDKVLLDAPCSGLGVLSKRADLRWNRSLEDMEQLKNLQDELLDAAAILVKPGGVLVYSTCSIDPEENEERVAAFLQRHPEFSIDPVGRYVPSDFVTEGGFYFSNPVKHALDGAFAARLVRSS* 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8721936 8728041 - Vvi19g678 Vvi19g678 782177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g678 525 CDD AdoMet_MTases 336 461 - -
Vvi19g678 525 Gene3D - 76 219 IPR035926 -
Vvi19g678 525 Pfam NusB family 95 198 IPR006027 GO:0003723|GO:0006355
Vvi19g678 525 PRINTS Viridiplantae FMU-related RCMT signature 65 88 IPR023268 -
Vvi19g678 525 PRINTS Viridiplantae FMU-related RCMT signature 89 105 IPR023268 -
Vvi19g678 525 PRINTS Viridiplantae FMU-related RCMT signature 205 218 IPR023268 -
Vvi19g678 525 PRINTS Viridiplantae FMU-related RCMT signature 482 494 IPR023268 -
Vvi19g678 525 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 248 524 IPR001678 GO:0008168
Vvi19g678 525 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 28 524 IPR023267 GO:0001510
Vvi19g678 525 Gene3D Sun protein; domain 3 220 321 - -
Vvi19g678 525 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 102 523 IPR004573 GO:0006364|GO:0008649
Vvi19g678 525 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 220 523 IPR029063 -
Vvi19g678 525 Pfam 16S rRNA methyltransferase RsmB/F 327 521 IPR001678 GO:0008168
Vvi19g678 525 Gene3D Vaccinia Virus protein VP39 322 525 IPR029063 -
Vvi19g678 525 PRINTS RNA (C5-cytosine) methyltransferase signature 308 322 IPR023267 GO:0001510
Vvi19g678 525 PRINTS RNA (C5-cytosine) methyltransferase signature 337 347 IPR023267 GO:0001510
Vvi19g678 525 PRINTS RNA (C5-cytosine) methyltransferase signature 405 417 IPR023267 GO:0001510
Vvi19g678 525 PRINTS RNA (C5-cytosine) methyltransferase signature 455 471 IPR023267 GO:0001510
Vvi19g678 525 PRINTS RNA (C5-cytosine) methyltransferase signature 506 523 IPR023267 GO:0001510
Vvi19g678 525 SUPERFAMILY NusB-like 95 232 IPR035926 -
Vvi19g678 525 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 28 524 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g678 K03500 rsmB, sun; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] - vvi:100253242 1014.6
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g678 Blo03g00505 . Bda07g00413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0007 . . . . Csa07g00858 . . . . . . Bpe11g00590 . . Bma14g00679 . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01039 Cme01g01121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016633 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6