Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g68 ATGATGAAGAAGTCGATGAAAGAGAGAAATGTTGATTGGGAAATTTCAGACTGCAAAAATGCATGGATGCTGATGTGGAGATTGGTAACTAAAGCTACTTTAAAATTTCATTTTTGTTACGTGTCTGATTTTCCATGCCATAAATTTCCTGGGAATTCATCCTTAAACTCATTTGAATTTATAAAAAATAATTTAATGAAAAAGGAAAAAGAAAGGAAAAGTAATGCGCATGAACGTACCTTCGTGTTGTTGAACATGCAAAGCTTCTCCTCTTTAAAAACCTCCCTTAAACCCCTCGCTCCAACTCATTCAATTCAGAGTAAAGCGAACCAGCCATTGCTACAGAGCGAATCCATGGATTCTTCGTCTCTTCTCCTCTTGTTGTTGCTGGGTTTCTTTTGTTTTTCTGAGTTCACATCCCATGATCAACTTATTCCAAAAGATGAAGGTATCACCACTGTAATCTCACTTGTTCTTTCCATTTCTGGGGAAAATGAAACTTGGGTTTTGTTCTACAGCAATGTCACATGCAACTGTACCTTCAATGAAGGAACTGTTTGCCATGTCACAAACATGTATGATTTTCTTTTCTTGTTCTTCCCTGACATGATACATATATCAAAAATTCAATCCATTAGATTAATGGAAAATGATTTTAAGGGAAATGTAGTTTTAAGGGATTTTAATATTATGGAAAAAGCTGAAGGTGCCGGTAAAGGCATTTGTAGGGATTTTGATGCTTGTGTTGATGGTAGCACTCTGGAGATCCACTTATACTGGATGGGCAAAGGGACTAATTCCATTCCGGAAAAAGGTGTATATGGACCTCTTATATCTGCTATTGCAGTGACACCAAAATTCAATCCCAAGCCGGCGCTGTCTGTTGGAGGTATCATCGGCATTGTGATAGTTTCATGTGTGGTCCTCATATTGATTTTGGTACTCCTACGAATGAAAGGCTACTTAGGAGGAAAAGACCTTGAAGATAGAGAACTACGTGAGCTAGGGACTGGTTATTTTAGTTTACGACAGATCAAAGCTGCTACCAATAACTTTGACTCTGCAAATAAGATTGGTGAAGGTGGATTTGGGCCAGTTTACAAGGGTGTACTGTCAGATGGTTCAGTAATTGCTGTTAAGCAGCTCTCTTCTAAATCGAAGCAAGGGAACCGAGAATTTGTAAATGAAATAGGCATGATATCTGCCTTACAACACCCAAATCTTGTGAAGCTTTATGGCTGTTGTATTGAAGGGAACCAGTTGTTGCTCATATACGAATATTTGGAAAACAATTGTCTTGCACGTGCACTTTTTGGTCGAGATGAACAGCGGCTAAATTTGGACTGGCCAACTAGGAAGAAGATATGCTTGGGGATAGCAAGGGGATTGGCATATCTTCATGAGGAGTCAAGATTGAAAATTGTTCATAGAGATATAAAGGCAACAAATGTGCTGCTTGATAAGAATCTAAATGCTAAGATATCCGACTTTGGCTTGGCTAAGCTGGATGAAGATGAGAACACCCATATCAGCACACGGATAGCTGGAACGATAGGACACATGGCTCCTGAATATGCAATGAGGGAGATTGTCAGCGGGAAAAGCAACACCAATTACAGGCCAAAGGAAGAGTTTGTTTATCTTCTTGATTGGGCTTATGTCCTGCACGAGCAGGGAAATCTTCTGGAGCTGGTGGATCCAAGTCTTGGTTCAAACTTCTCAGAGGAGGAGGTGATGAGGATGCTGAACTTGGCCCTCTTATGCACCAACCAATCTCCCACTCTCAGGCCACCCATGTCCTCTGTAGTGAGTATGCTTGACGGCAAAATTGCAGTCCAAGCACCAACAATCAAGCATGATTCTATGAACCCGGATATGAGATTCAAAGCCTTCGAGAAGCTCTCACTGGACAGCCAGTCTCATGTCTCAGCATTCTCTGTAGACAGTCAGGTCCAAGGCAGCATATCACTTGATGGACCATGGATTGATTCCTCAATTTCCCTCCATAGCAGAGAAGAAACAAGGGACTTTTCTTCATCAAGCAAGCTTCTTACAGGACACCAAGATCTTTACAGTATACATTTGGACTGA 2091 40.79 MMKKSMKERNVDWEISDCKNAWMLMWRLVTKATLKFHFCYVSDFPCHKFPGNSSLNSFEFIKNNLMKKEKERKSNAHERTFVLLNMQSFSSLKTSLKPLAPTHSIQSKANQPLLQSESMDSSSLLLLLLLGFFCFSEFTSHDQLIPKDEGITTVISLVLSISGENETWVLFYSNVTCNCTFNEGTVCHVTNMYDFLFLFFPDMIHISKIQSIRLMENDFKGNVVLRDFNIMEKAEGAGKGICRDFDACVDGSTLEIHLYWMGKGTNSIPEKGVYGPLISAIAVTPKFNPKPALSVGGIIGIVIVSCVVLILILVLLRMKGYLGGKDLEDRELRELGTGYFSLRQIKAATNNFDSANKIGEGGFGPVYKGVLSDGSVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNCLARALFGRDEQRLNLDWPTRKKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNAKISDFGLAKLDEDENTHISTRIAGTIGHMAPEYAMREIVSGKSNTNYRPKEEFVYLLDWAYVLHEQGNLLELVDPSLGSNFSEEEVMRMLNLALLCTNQSPTLRPPMSSVVSMLDGKIAVQAPTIKHDSMNPDMRFKAFEKLSLDSQSHVSAFSVDSQVQGSISLDGPWIDSSISLHSREETRDFSSSSKLLTGHQDLYSIHLD* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 730231 751954 + Vvi19g68 Vvi19g68 781567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g68 696 SUPERFAMILY Protein kinase-like (PK-like) 337 619 IPR011009 -
Vvi19g68 696 ProSiteProfiles Protein kinase domain profile. 352 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g68 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Vvi19g68 696 SMART serkin_6 352 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g68 696 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 319 651 - -
Vvi19g68 696 Pfam Malectin domain 219 281 IPR021720 -
Vvi19g68 696 Pfam Protein tyrosine and serine/threonine kinase 355 537 IPR001245 GO:0004672|GO:0006468
Vvi19g68 696 Gene3D Transferase(Phosphotransferase) domain 1 428 620 - -
Vvi19g68 696 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 319 651 - -
Vvi19g68 696 CDD STKc_IRAK 358 608 - -
Vvi19g68 696 Gene3D - 205 286 - -
Vvi19g68 696 Gene3D Phosphorylase Kinase; domain 1 324 427 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76473 PF07714 PK_Tyr_Ser-Thr 2.20E-38 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g68 - - vvi:100267526 873.618