Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g680 ATGAAGTTGAAGCGGAGGAGGGCACTAGAAGTGCCTCCAAAAATTAGATCCTTCATCAATGGTGTTACATCTACTCCGCTTGAGAATATAGAAGAACCCCTAAAATGTTTTATTTGGGAGTTTGATAAGGGAGATTTCCATCATTGGGTTGATCTTTTTAATCATTTTGATTCGTTTTTTGAGAAGCACATAAAGCCGAGGAAGGATTTGCAGGTTGAGGATAACTTTTTAGAATCTGATCCTCCCTTCCCAAGAGAAGCTGTTCTTCAAATTCTCCGTGTCATAAGAATAATTTTGGAGAACTGCACAAATAAGCATTTCTATAGTTCATATGAACAGCATCTTTCAGCTCTGCTTGCTTCTACGGACGCAGATGTGGTTGAGGCTTGTCTTCAAACTTTAGCAGCTTTCTTGAAGAAATCAATTGGAAAATACCCCATAAGGGATGCTTCTTTAAATTCAAAGTTATTTGCTTTTGCACAAGGTTGGGGGGGAAAGGAAGAAGGCCTTGGATTAATTGCATGCAGTGTACAAGATGGGTGTGATCAAATTGCTTATGACTTAGGTTGTACTCTCCATTTTGATTTAAGATTTTCTCTTCTGACAAGATTGCGGTTTGCAAGGGCATTTGGCTCTTTAGCTGCTCGCCAGCAGTACACATGCATTCGCCTCTATGCCTTTATGGTTCTTGTTCAATCAGGCAGTGATGCTGATGACTTGGCTTCCTTTTTTACTGCTGTGCCAGAGGTGACCAATGAATTGGTATCATTATTGAGCTATGAAGATGCCATTCCTATAAAAATTCGAATTCTGAGTCTGTCATCATTGGCTGCTCTTTGTCAAGATCGGTCTCGCCAGCCATCTGTATTGAATGCTGTAACATCTGGTGGGCATCGAGGCATCTTACCCAACACAGAGCCCCAACACTTGCATTTGGTCAGCACAGCTGTACATATTCTAGAAGCTTTTATGGATTACAGTAATCCAGCTGCTGCATTGTTCAGAGATTTGGGGGGTTTGGATGATACCATTTCTCGCTTGAAAGTAGAAGTATCTCATCCTCTTTATTCTGAGGCATTGGTCGCCTATCACTGTCGTTTACTAATGAAAGCTTTACTAAGGGCCATATCTCTTGGAACCTATGCCCCTGGAAGTACCACTCGTATTTATGGTTCTGAGGAGAGTTTGTTGCCTCATTGCTTATGCATTATTTTTAGAAGAGCCAAAGATTTTGGTGGGGGGGTGTTTTCGCTTGCCGCAACCGTCATGAGTGATCTCATTCACAAAGACCCTACCTGTTTTCCTGTCTTAGATGCGGCTGGTCTCCCTTCTGCCTTCATGGATGCTATAATGGATGGCATTCTCTGCTCTGCTGAAGCCATAGCATGCATACCTCAGTGCTTGGATGCCTTATGCCTGAATAACAATGGCCTTCAGGCTGTGAAAGATCGCAATGCTTTGAGGTGCTTTGTGAAAATATTTACTTCCAGGACATATTTGCGTGCCCTGACTGGTGATACTCCAGGATCCTTGTCCAGTGGACTGGATGAACTAATGCGCCATGCTTCCTCATTGCGTGGACCTGGAGTGGACATGCTGATTGAGATCTTGAATGCCATTTCAAAGATAGGATCTGGGACTGAATCTCCTCCATCATCCAGTGATTCTATCTCTGAGCAGGCCATGGAGCCCTCTTCTGATGCTTCATTGGCTAATATTGAATCTTTCCTTCCAGAATGCATAAGCAATGCTGCTCGTCTTCTTGAAACAATTCTTCAAAATGCTGATACATGCCGCATTTTTGTTGAGAAGAAGGGAATTGAAGCTGCACTTAGTTTCTCAGGGTATTCTAGCTCAAATGGGCTTGATTTGTCACTCTCTGTGAAGTGTCGATATCTTGGAAAGGTTGTGGATGACATAGCAGTTCTCACGTTTGATGGCAGGCGGCGTACCTGTTACACAGCAATGGTTAATAACTTTTATGTCCATGGAACCTTCAAGGAGCTACTCACAACATTTGAAGCTACAAGTCAGTTGTTATGGACCCTTCCTTACTCTGTTCCAACTCAAGGCATTGATAATGAAAAAGTGGGTGAAGGAAGCAAATTATCTCACACTTTTGTTCGTATGCTTCAGTCTCAGGTTCTGGATGTAATGCTTCCTGTCTGGAACCACCCCATGTTCCCAAGTTGTAGTTCAACTTTCATCACTTCCATTATTTCACTTGTTACTCATATATACTCTGGTGTTGGGGATGTTAAGCGAAATCGCAATGTCGAGATGGGTTTTACAAGGGCAAGAGCTGAGGAAGCGCTGAGAAGGGTGGAAACAAATAGTGTTGAACTGGCCATGGAATGGCTGTTTAGTCGTCCTGAAGATCCTGTGCAGGAGGATGATGAACTGGCTCGGGCACTTGCTTTGTCACTAGGAAGTTCTTCAGAAACATCTAAAGTGGATAGCATTGATAAGTCAATGGACATTCTGACTGAAGAGGGACAAACAAAGGCACCGCCTGTTGATGATATCCTTGTTGCATCGATGAAGTTGTTTCAGAGTAGTGATACAATGGCATTCCCATTGACAGATTTGCTTGTGACTCTTTGCAATCGGAGCAAAGGAGAAGATCGATCAAAGGTGGTCACTTATCTTATTCAGCAGCTAAAGCTTTGTCCACTGGAATTTTCAAAGGATGCTAGTGCACTGTATATGATATCACATATTTTAGCATTGCTTCTGTTTGAAGATGGAAGTACACGAGAAATTGCTGCACGTAATGGTATTGTTTCTGCTGCAATTGATATTTTGATGAGCTTCAAGGCTAGAAATGAATTAGGGAATGAGGTTCTAGTCCCAAAATGCATAAGTGCTCTACTGCTTATCTTGGATAACTTGTTGCAGTCCCGTTCTAGATTTTCTTCTGAAACTACAGAAGGAAATGCAATGCAGAAAACAAGTTGGCTTCTGATGCCCATGAGAAGGAACCTGATTCCACCCTTGAGAAAATATTAG 3009 42.41 MKLKRRRALEVPPKIRSFINGVTSTPLENIEEPLKCFIWEFDKGDFHHWVDLFNHFDSFFEKHIKPRKDLQVEDNFLESDPPFPREAVLQILRVIRIILENCTNKHFYSSYEQHLSALLASTDADVVEACLQTLAAFLKKSIGKYPIRDASLNSKLFAFAQGWGGKEEGLGLIACSVQDGCDQIAYDLGCTLHFDLRFSLLTRLRFARAFGSLAARQQYTCIRLYAFMVLVQSGSDADDLASFFTAVPEVTNELVSLLSYEDAIPIKIRILSLSSLAALCQDRSRQPSVLNAVTSGGHRGILPNTEPQHLHLVSTAVHILEAFMDYSNPAAALFRDLGGLDDTISRLKVEVSHPLYSEALVAYHCRLLMKALLRAISLGTYAPGSTTRIYGSEESLLPHCLCIIFRRAKDFGGGVFSLAATVMSDLIHKDPTCFPVLDAAGLPSAFMDAIMDGILCSAEAIACIPQCLDALCLNNNGLQAVKDRNALRCFVKIFTSRTYLRALTGDTPGSLSSGLDELMRHASSLRGPGVDMLIEILNAISKIGSGTESPPSSSDSISEQAMEPSSDASLANIESFLPECISNAARLLETILQNADTCRIFVEKKGIEAALSFSGYSSSNGLDLSLSVKCRYLGKVVDDIAVLTFDGRRRTCYTAMVNNFYVHGTFKELLTTFEATSQLLWTLPYSVPTQGIDNEKVGEGSKLSHTFVRMLQSQVLDVMLPVWNHPMFPSCSSTFITSIISLVTHIYSGVGDVKRNRNVEMGFTRARAEEALRRVETNSVELAMEWLFSRPEDPVQEDDELARALALSLGSSSETSKVDSIDKSMDILTEEGQTKAPPVDDILVASMKLFQSSDTMAFPLTDLLVTLCNRSKGEDRSKVVTYLIQQLKLCPLEFSKDASALYMISHILALLLFEDGSTREIAARNGIVSAAIDILMSFKARNELGNEVLVPKCISALLLILDNLLQSRSRFSSETTEGNAMQKTSWLLMPMRRNLIPPLRKY* 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8734444 8743698 + Vvi19g680 Vvi19g680 782179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g680 1002 Coils Coil 765 785 - -
Vvi19g680 1002 CDD UBA_atUPL1_2_like 759 790 - -
Vvi19g680 1002 SUPERFAMILY ARM repeat 222 620 IPR016024 -
Vvi19g680 1002 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 8 179 - -
Vvi19g680 1002 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 301 612 - -
Vvi19g680 1002 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 611 688 - -
Vvi19g680 1002 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 194 300 - -
Vvi19g680 1002 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 704 952 - -
Vvi19g680 1002 Pfam Domain of Unknown Function (DUF913) 314 615 IPR010314 -
Vvi19g680 1002 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 759 790 IPR015940 -
Vvi19g680 1002 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 796 815 IPR003903 -
Vvi19g680 1002 Pfam Domain of Unknown Function (DUF908) 85 140 IPR010309 -
Vvi19g680 1002 Pfam Domain of Unknown Function (DUF908) 195 303 IPR010309 -
Vvi19g680 1002 SUPERFAMILY ARM repeat 76 350 IPR016024 -
Vvi19g680 1002 Gene3D - 759 822 - -
Vvi19g680 1002 SMART uba_6 751 789 IPR015940 -
Vvi19g680 1002 SUPERFAMILY UBA-like 759 798 IPR009060 GO:0005515
Vvi19g680 1002 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL2-LIKE ISOFORM X1 194 300 - -
Vvi19g680 1002 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL2-LIKE ISOFORM X1 704 952 - -
Vvi19g680 1002 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL2-LIKE ISOFORM X1 8 179 - -
Vvi19g680 1002 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL2-LIKE ISOFORM X1 301 612 - -
Vvi19g680 1002 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL2-LIKE ISOFORM X1 611 688 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g680 - - - rcu:8286859 932.554
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g680 . . . . Bpe09g00120 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00420 . . . . . . . . . . . . . . . . . Cpe14g00783 . Bhi11g00472 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005565 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 0 2 3 2 39