Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g681 ATGAGAATAGAAGTGGAAGAGGCTATGACTGCCAACCCACCTATGGAGCTTGGGATGGATTTCATGCGTGAAGAAATGGATGAAGGTGGAGTTTTGCACAACACAGACCAAATTGAGATGACTTATCATGTGAGGTGGAGGGAAGCGCTTCATGGATTAGATCATTTACAAGTACTTGGGCAGCCAGGGGCTGCAAGTGGACTAATTGAAGTTGCTGCTGAACCCTTTGAGGGGGTGAATGTGGATGATCTTTTAAGCTTTCGCAGGCCTTTAGGGTTTGAACGCCGCCGTCAGACAGGTAGAACATCCTTTGAGCGATCTGTTACAGAAATAAATGGTTTTCAGCATCCTCTCCTCTTGAGACCATCCCAGTCTGGAGATCTGGTTTCAATGTGGTCATCAGGTACAAACTCGTCTAGGGATTTAGAAGCATTGTCTGCCGGAAACTTTGATGTTGCTCATTTCTACATGTTTGATGCTCCGGTTCTTCCTTATGATCATATGCCAACTAGTCTCTTTGGTGACCGTTTGGGTGGGGCTGCTCCCCCACCTTTGACTGATTATTCTATAGGTATGGACTCGTTTCAGATGGTGGGAAGAAGGGGGCCAGGTGATGGTCGGTGGACTGATGATGGGCAGCCACAAGGGAGTAGTCAGGCTACCATTATCGCACAAGCAGTAGAGGAGCATTTCATATCTCAATTACGCAGTATTGCTCCAGCAAACACTCATGCTGAAAGGCAAACCCAGAGTTCAGGACTTCAGCATAATCAACAATTGGATGCTCCCCTGTCTAATGATAGTCAACCGGCAGAAGGGGGTGATAATACTGGAAGTCAAAGAAGTGAAGGGCAGCATGAAGAAAACAGTAATGAAACTGCAAATCATCAAATTAGTCAAACAACACCAAATGTGCATGATGGCATGGAAATTAGTGACGGAAATGGCACTTCCAGTGAGCCGGTGGAGAGAATGCCAGAGTTGGTTACTTTATCTGCAGACTTGCATGGAATGGATGACGAGTCCAATAATCGTGAGATGGTGAATTCTGGTTTAGAAATCCCTAATGCAGGTGATGGTCATGCTAATACTCTTCATGCTAGCGCTGATGTTGATATGAATGGTGCCAGCACTGAAGATCAAACTGAGCAAATTGGGCCTCCTTCTGAATATGGTACGGATGAGCCACAATCAAGGCAAAACACTCTGGTTTCTGTAAATGCTGATCAGACGGATCAAAATAGTATGAATAGTGAAGCTCCTAGTGCAAATGCTATCGATCCAACCTTCTTGGAGGCATTACCTGAAGATTTACGGGCAGAAGTTCTGGCTTCCCAGCAAGCTCAGCCTGTTCAAGCTCCAACTTATGCACCGCCTTCTGGAGAAGATATTGATCCTGAATTTTTAGCTGCTCTCCCCCCAGATATCCAGGCAGAAGTTTTGGCTCAGCAAAGAGCACAGAGGGTGGCACAGCAGGCTGAAGGACAACCAGTGGACATGGACAATGCTTCAATCATAGCTACTTTTCCTGCTGAATTGCGTGAAGAGGTACTTTTGACGTCTTCTGAAGCTGTCTTGTCTGCTTTACCGTCTCCATTAATCGCTGAAGCTCAAATGCTCAGGGACAGAGCAATGAGTCATTACCAGGCTCGCAGCCTTTTTGGGACTAGCCACAGGCTTAATAATAGGAGGAATGGTTTGGGGTTTGATAGACAGACAGTGATAGACAGAGGTGTTGGAGTTTCATTTCATCGAAAAGCTGCTTCTGCTATTTCAGACAGCTTAAAGGTGAAGGAAATTGATGGCGAACCACTTTTGGGTGCAAATGCGTTGAAAGCACTGATCCGGCTCCTTCGACTGGCACAGCCTCTTGGTAAAGGCCTTCTGCAGAGACTCTTGTTGAACCTATGTGTGCATAGTGGTACAAGGGCCATTCTTGTTCGTCTTTTGCTCGATATGATCAAACCTGAGGCTGAGGGATCAATCAGGGAATTGGCAACAGTTAATTCTCAAAGGCTTTATGGTTGTCAGTCCAATGTTGTGTATGGACGATCACAGTTGTTGGATGGTCTTCCTCCTGTGGTGTTGCGTCGAGTTATTGAGATTTTGACCTATTTAGCTACAAATCATCCTGTGGTTGCAAACCTTTTGTTCTACTTTGATCCATCATCTGTTGTTGAGTCTTCAAGTCCAAAATACACAGAAACCAAGAAGGATAAATGCAAGGAGAAAATTGTTGAAGGAGGAGTTTCACCGAATCCTTCAGGTAGTTCTCAGCAAGGGGATGTTCCCCTGATACTATTCCTGAAGCTCTTGGATCGACCAATATCTTTACAAAGCATTGCTCATCTTGATCAGGTCATGAACCTGCTTCAAGTGGTTGTTAATAGTGCAGCTTCAAAGTTAGAGTGTCAGACTCAGTCCGAACAGGCAACAGATGATTCCCAAAATTTGCCTGCCAATGAAGCATCGGGTGATCCCACTCTGTTAGAACAAAATTCTAATCAGGAAGATAAAGGTCACTCTGCTGAGTTGTCCACTTCAGATGGAAAGAAATGCATCAATACATATGATATCTTCTTGCAGCTCCCACAGTCCGATTTGCACAACCTCTGTAGTCTTCTTGGCTATGAAGGGCTTCCGGATAAAGTTTACAAATTTGCTGGCGAGGTGCTGAAGAAGTTGGCCTCAGTTGCTGTTCCCCATCGGAAGTTCTTTACTTCTGAGCTCTCAGATTTAGCTCATCATTTGAGTAGTTCAGCTGTCAGTGAGCTTGTTACCCTGAGGAATACACACATGCTTGGTCTGAGTGCTGCCTCCATGGCTGGGGCTGCCATCTTACGCGTGTTACAAGTGCTTAGTTCACTCAATTCGCCAAACATTGATGGGAATAAGGGTATGGAGAGTGATGGGGAACCGGAGGAGCAAACCATTATGTGGAAATTGAATGTTGCACTTGAACCCTTGTGGCAAGAACTGAGTGACTGTATAAGCACGACTGAGACACAGCTTGGGAACAGCTCTTTCTCTCCAACTATGCTCCTGCCCTTCATTGAGGCCTTCTTTGTTTTGTGTGAAAAACTACAAGCAAACCATTCTGTCATGCATCAAGATCATGCCAATATAACTGCAAGAGAAAGAAGGCTTGATGGTTCTGTCACTTTTGTAAGGTTTGCTGAGAAGCACCGCCGGCTGTTAAATGCTTTTATCAGACAGAATCCAGGCTTGTTGGAGAAATCACTTTCGTTGGTGCTGAAAGCACCAAGGCTGATTGATTTTGACAATAAAAGAGCATATTTCCGCTCAAGAATCAGGCAACAGCATGAGCAACACCTCTCTGGTCCACTGCGGATTAGTGTCCGGCGAGCATATGTGTTAGAGGACTCATACAATCAGTTGCGCTTGCGACCAACTCAGGAATTAAAGGGGCGTTTGAATGTGCAGTTTCAAGGTGAAGAGGGTATTGATGCTGGTGGTCTGACGAGAGAATGGTATCAATTGCTGTCAAGAGTCATATTTGACAAAGGAGCTTTACTTTTCACCACTGTGGGAAACAACTCAACATTCCAGCCAAACCCCAATTCAGTCTACCAGACTGAACACCTTTCCTACTTTAAATTTGTGGGTCGAGTGGTTGCAAAGGCGCTATTTGATGGTCAGCTTTTGGATGTTTATTTCACTCGGTCGTTTTACAAGCATATTCTTGGTGTGAAGGTGACTTACCATGATATAGAGGCTGTTGATCCTGATTACTACAAGAATTTGAAGTGGATGCTGGAGAATGATGTGAGTTGCATACCTGAAATGACATTTAGCATGGATCCAGATGAGGAAAAACACATTCTTTATGAGAAAACTGAGGTTACTGATTATGAGCTTAAACCTGGAGGAAGGAATATAAGGGTCACAGAAGAAACAAAGCATGAGTATATAGACCTTGTTGCTGAGCATATCTTGACAAATGCTATTCGTCCTCAAATCAATTCCTTCCTTGAAGGCTTCAATGAATTGGTTCCACGAGAACTTATTTCTATTTTCAATGATAAAGAACTTGAGCTGCTTATTAGTGGACTCCCAGAAATTGATTTGGATGATCTGAAGGCCAACACTGAGTACACAGGGTACACTGCAGCATCTAGTGTTGTTCAGTGGTTTTGGGAGGTGGTTAAAGCTTTCAACAAGGAAGACATGGCAAGACTGCTGCAATTTGTTACTGGAACATCAAAGGTCCCATTGGATGGTTTTAAAGCATTGCAAGGTATATCTGGGCCTCAGAAATTTCAAATCCATAAGGCATATGGAGCTCCAGAGCGGCTGCCATCAGCTCATACCTGCTTCAATCAACTAGACCTCCCTGAGTATTCTTCCAAGGAGCAGCTTCAAGAGCGCTTGCTGCTTGCTATCCATGAAGCTAGTGAAGGGTTTGGCTTCGGTTAA 4437 44.51 MRIEVEEAMTANPPMELGMDFMREEMDEGGVLHNTDQIEMTYHVRWREALHGLDHLQVLGQPGAASGLIEVAAEPFEGVNVDDLLSFRRPLGFERRRQTGRTSFERSVTEINGFQHPLLLRPSQSGDLVSMWSSGTNSSRDLEALSAGNFDVAHFYMFDAPVLPYDHMPTSLFGDRLGGAAPPPLTDYSIGMDSFQMVGRRGPGDGRWTDDGQPQGSSQATIIAQAVEEHFISQLRSIAPANTHAERQTQSSGLQHNQQLDAPLSNDSQPAEGGDNTGSQRSEGQHEENSNETANHQISQTTPNVHDGMEISDGNGTSSEPVERMPELVTLSADLHGMDDESNNREMVNSGLEIPNAGDGHANTLHASADVDMNGASTEDQTEQIGPPSEYGTDEPQSRQNTLVSVNADQTDQNSMNSEAPSANAIDPTFLEALPEDLRAEVLASQQAQPVQAPTYAPPSGEDIDPEFLAALPPDIQAEVLAQQRAQRVAQQAEGQPVDMDNASIIATFPAELREEVLLTSSEAVLSALPSPLIAEAQMLRDRAMSHYQARSLFGTSHRLNNRRNGLGFDRQTVIDRGVGVSFHRKAASAISDSLKVKEIDGEPLLGANALKALIRLLRLAQPLGKGLLQRLLLNLCVHSGTRAILVRLLLDMIKPEAEGSIRELATVNSQRLYGCQSNVVYGRSQLLDGLPPVVLRRVIEILTYLATNHPVVANLLFYFDPSSVVESSSPKYTETKKDKCKEKIVEGGVSPNPSGSSQQGDVPLILFLKLLDRPISLQSIAHLDQVMNLLQVVVNSAASKLECQTQSEQATDDSQNLPANEASGDPTLLEQNSNQEDKGHSAELSTSDGKKCINTYDIFLQLPQSDLHNLCSLLGYEGLPDKVYKFAGEVLKKLASVAVPHRKFFTSELSDLAHHLSSSAVSELVTLRNTHMLGLSAASMAGAAILRVLQVLSSLNSPNIDGNKGMESDGEPEEQTIMWKLNVALEPLWQELSDCISTTETQLGNSSFSPTMLLPFIEAFFVLCEKLQANHSVMHQDHANITARERRLDGSVTFVRFAEKHRRLLNAFIRQNPGLLEKSLSLVLKAPRLIDFDNKRAYFRSRIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRLRPTQELKGRLNVQFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNNSTFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWMLENDVSCIPEMTFSMDPDEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYIDLVAEHILTNAIRPQINSFLEGFNELVPRELISIFNDKELELLISGLPEIDLDDLKANTEYTGYTAASSVVQWFWEVVKAFNKEDMARLLQFVTGTSKVPLDGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFGFG* 1479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8744182 8752009 + Vvi19g681 Vvi19g681 782180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g681 1478 MobiDBLite consensus disorder prediction 243 280 - -
Vvi19g681 1478 SMART hect_3 1135 1478 IPR000569 GO:0004842
Vvi19g681 1478 MobiDBLite consensus disorder prediction 805 841 - -
Vvi19g681 1478 MobiDBLite consensus disorder prediction 337 400 - -
Vvi19g681 1478 Pfam Ubiquitin binding region 421 448 IPR025527 -
Vvi19g681 1478 Pfam Ubiquitin binding region 459 488 IPR025527 -
Vvi19g681 1478 Pfam Ubiquitin binding region 495 525 IPR025527 -
Vvi19g681 1478 Gene3D - 457 492 - -
Vvi19g681 1478 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 199 1477 - -
Vvi19g681 1478 SUPERFAMILY Hect, E3 ligase catalytic domain 1097 1470 IPR035983 GO:0004842
Vvi19g681 1478 Pfam HECT-domain (ubiquitin-transferase) 1167 1477 IPR000569 GO:0004842
Vvi19g681 1478 MobiDBLite consensus disorder prediction 243 323 - -
Vvi19g681 1478 MobiDBLite consensus disorder prediction 291 319 - -
Vvi19g681 1478 CDD HECTc 1116 1476 IPR000569 GO:0004842
Vvi19g681 1478 MobiDBLite consensus disorder prediction 197 219 - -
Vvi19g681 1478 Gene3D Hect, E3 ligase catalytic domain 1238 1322 - -
Vvi19g681 1478 Gene3D Hect, E3 ligase catalytic domain 1359 1478 - -
Vvi19g681 1478 ProSiteProfiles HECT domain profile. 1137 1478 IPR000569 GO:0004842
Vvi19g681 1478 MobiDBLite consensus disorder prediction 370 400 - -
Vvi19g681 1478 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL2-LIKE ISOFORM X1 199 1477 - -
Vvi19g681 1478 MobiDBLite consensus disorder prediction 805 848 - -
Vvi19g681 1478 Gene3D Hect, E3 ligase catalytic domains 1089 1355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g681 - - - vvi:100246297 2731.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g681 . . . . . . . Bma13g01122 . Cmo06g00681 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1250 Cone15ag1274 . . . . . Blo10g00871 . Bda12g00971 . . . . . . . . . . . . . Bhi11g00471 . . . . . . . . . . . . . . . Chy06g01892 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005565 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 0 2 3 2 39