Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g682 ATGTCGGACAACGGTAGACCACTGCCAAAATTTGGTGAATGGGATGTTAATGACCCTGCTTCTGCTGAAGGTTTTACTGTGATCTTTAATAAGGCTAGGGATGAGAAAAGAACTGGTGGCCAACCTGAGTCACCAGCAAATGTGGAAAATAATGTTAAGCAGGGAGTGGAGCCTAGCAAGCCTCAAACTAAAAAATGGTTTTGTTGCTTGCAAGCCCCCCGTGCAGAATCTTGA 234 44.87 MSDNGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKRTGGQPESPANVENNVKQGVEPSKPQTKKWFCCLQAPRAES* 78
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8775196 8778689 + Vvi19g682 Vvi19g682 782181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g682 77 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Vvi19g682 77 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED 3 63 - -
Vvi19g682 77 MobiDBLite consensus disorder prediction 43 58 - -
Vvi19g682 77 MobiDBLite consensus disorder prediction 33 62 - -
Vvi19g682 77 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 3 63 IPR040387 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g682 - - - vri:117909661 160.614
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g723 Vvi19g682 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g682 . . . . . . . . . . . . . . Sed07g2758 . . Bhi09g01783 Tan01g3200 Cmetu06g0507 . . . . . . . . . . . . . . Cone15ag1275 . Csa03g00419 . . . . . . . . . . . . . . . . . . . Bhi11g00469 . . . . . . . . . . . . . . . Chy01g01137 Cme01g00893
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000283 4 7 1 2 4 5 8 5 5 5 5 5 8 3 5 7 1 5 8 0 5 5 5 1 5 5 4 9 5 4 141