Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g687 ATGGGCACGAAAGACCGTCAAAATGCTACTGACAATTCTAAAGTGGAGGTTGGAGAGATAGACACAAGTGCACCATTTCAATCTGTTAAAGATGCTGTCAGCTTATTTGGTGAATTTTCTGGAGAAAAGCCTTCCATTAGGAAGGCAAAGCCTCATTCTGCAGAGAGAGTATTGGCCAAGGAGACACAGCTCCACCTGGCACAGAAAGAGCTAAACAAGTTAAAAGAACAATTAAAGAATGCGGAAACTACTAAAGCCCAGGCACTTGTAGAGCTTGACAAGGCTAAGAGAACAGTTGAGGATCTAAATCAGAAGCTCACTACTGTCAGTGAATCAAAGGAATCTGCAGTTAAGGCAACAGAAGCTGCAAAGAATCAAGCAAAGCAACTTGAAGCCTTTGATCCTGAACTCACCAGAAATCTTGAGGCACAACTAGCTGAAACAGTGAGTGAGATTGGGGCTGTGAAAAAGGAGATGGAAAATGCCAGGGCTTCAGATCTTGATTCTGTGAAAACAGTAACTTTAGAGCTGGATGATGCTAAAGAGTCATTGCATAAAGTAGCTGATGAGGAAAGCTCTCTCCGAAACTTGGTTGAATCCCTTAAGAGGGAGCTTGAGAACGTGAAGAAAGAGCATTCTGAAATGAAGGAGAAGGAAGCAGAAACAGAATCCATTGCTGGGAATCTGCATGTGAAGCTCCGGAAAAGCAAATCTGAGCTTGAAGCATGCCTTGCAGAAGAATCCAAAGCTAGAGAAGAGATGATGAAAAAGGCTGAAGAGCTAAAGAAGGAAGCTCAAGCGACCAAAACGAAAGTGGCAGAGACAAAGGCCCTTGACCAGATCAAGATCTTGGCTGAGAGAACTAATGCTGCACGTGCCTCAACATCCGAGTCTGGCGCCAATATCACAATCTCTACAGAAGAGTTCAAGGCTTTGAGCCGAAAGGTTGAGGAATCCGACACATTAGCCGAAATGAAAGTGGCTGCTGCAATGGCTCAGGCAACTCAGAAGGAGATCGAGGAAATGAAGGCTGCAACAGAGGCTGCTCTGAAGAGGGCAGAGACTGCTGAGGCAGCCAAGAGAGCAGTGGAGGGAGAGCTCCGAAAATGGCGGGAACGAGATCAAAAGAAGGCAGCTGAAGCTGCATCTCGGATTCTGGCAGAATCGGAGATGTCATCAGAATCATCCCCGCGCCAATATAGGATTCAAAAGCAGAACCCACCTCAGAAAATCAATGAGGGGGGTCGGAAGATGGAGAAGGAGAAAAGTTCAGTGTCGAAAAAAGCACTTCTGCCCAATCTCAGCGGTATCTTCCACAGAAAGAAGAACCAGATCGAGGGCGGGTCCCCTTCCTATCTTCCAGGGGAGAAGCCTATTTGA 1380 46.23 MGTKDRQNATDNSKVEVGEIDTSAPFQSVKDAVSLFGEFSGEKPSIRKAKPHSAERVLAKETQLHLAQKELNKLKEQLKNAETTKAQALVELDKAKRTVEDLNQKLTTVSESKESAVKATEAAKNQAKQLEAFDPELTRNLEAQLAETVSEIGAVKKEMENARASDLDSVKTVTLELDDAKESLHKVADEESSLRNLVESLKRELENVKKEHSEMKEKEAETESIAGNLHVKLRKSKSELEACLAEESKAREEMMKKAEELKKEAQATKTKVAETKALDQIKILAERTNAARASTSESGANITISTEEFKALSRKVEESDTLAEMKVAAAMAQATQKEIEEMKAATEAALKRAETAEAAKRAVEGELRKWRERDQKKAAEAASRILAESEMSSESSPRQYRIQKQNPPQKINEGGRKMEKEKSSVSKKALLPNLSGIFHRKKNQIEGGSPSYLPGEKPI* 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8871321 8877907 + Vvi19g687 Vvi19g687 782186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g687 459 MobiDBLite consensus disorder prediction 388 410 - -
Vvi19g687 459 Gene3D - 87 264 - -
Vvi19g687 459 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 132 269 - -
Vvi19g687 459 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 12 129 - -
Vvi19g687 459 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 267 447 - -
Vvi19g687 459 Coils Coil 184 225 - -
Vvi19g687 459 MobiDBLite consensus disorder prediction 356 459 - -
Vvi19g687 459 Pfam Weak chloroplast movement under blue light 19 131 IPR008545 -
Vvi19g687 459 Coils Coil 57 112 - -
Vvi19g687 459 PANTHER BNAC03G14000D PROTEIN 12 129 - -
Vvi19g687 459 PANTHER BNAC03G14000D PROTEIN 132 269 - -
Vvi19g687 459 PANTHER BNAC03G14000D PROTEIN 267 447 - -
Vvi19g687 459 Coils Coil 325 373 - -
Vvi19g687 459 MobiDBLite consensus disorder prediction 356 383 - -
Vvi19g687 459 Coils Coil 233 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g687 - - - vvi:100263439 511.146
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g687 . . . . Bpe09g00119 . . . . Cmo06g00678 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1256 Cone15ag1278 . Csa03g00417 . . . Blo10g00872 . Bda12g00972 . . . . . . . . . . . Cpe14g00781 . Bhi11g00468 . . . . . . . . . . . . . . . Chy06g01895 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005145 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 6 2 1 1 1 1 1 1 1 0 4 2 1 41