Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g688 ATGGTAGCGCTAGCATCTCAGTTCCAGTATGAGTGGAATAACAGAGACGATCCTCTCACATTTATAAACCCATCGTCCTCTCCAATCACAGTCTCTTCAGCAGAGGGAGATAGCTTTCTCTTAGAACCCGCTTCCCAAATCGGGAGCGCTTCTGGAAGCTTTCAGAACGAGGGTTTGCTCTCCGGCGGCGACGGCACCAGCGACGCTGAGTTCGGTTTCTCCCGCCCCGATTTCCGCCAGAGTCCACTCGCCGGCACCGTCCAGTTGTACGACCGCCATGTGTTCCTCTGCTACAAGCACCCTCAGGTCTGGCCTCCCAGGATTGAGGCTGCAGAGTTCGATCGCCTTCCGAGACTTCTCTCCGCTGCTCTCATGGCCAGGAAGAGTGAGATGAAGAAACAGACCCGCTTAACAATATGTGAAGGACATGATGGAACTGAGACATCAAATGGAGATGTATTAATATTTCCAGACATGATCAGATACAGGAGATTGACGCATTTTGATGTTGACACATTTGTTGAAGAAGTGCTCGTGAAGGATGGTGAGTGGCAGCCTGTAACTCCTGAAAAACTAATTGGGTCATGCATTTTTGTTTGTTCTCATGGGTCACGGGATCGCCGTTGTGGTGTATGTGGACCCGCTGTTGTTGCTAGGTTCAAAGAAGAGATAGAATCGCATGGCCTTCAAGGTAAAGTGTCTGTGAGCCCATGCTCACACATTGGAGGCCATAAATATGCAGGAAATGTGATCATATTTGGATCAAATATTGATGGAAAAGTCAGTGGGCACTGGTATGGGTATGTTACTCCAGATGATGTACCTATTTTGCTTGAGCAGCATATTGAGAAGGGAGAAATTGTCTATGGACTGTGGAGGGGTCAGATGGGTTTATCCGAAGAAGAACAGACGAAATCCCAAGAGCTAAGGGTCCAATTAAATGGTGGGACAGGTGATGGAAAGCCCACAAAGGAGACTCTGCAAACACAAACAAATGAAATGGATACTGCTGCATGTGGATCTCAAATCGAGGTTATGGCCTGCTGCCAAGAAAACGGAAACTCTTCCTGTTGCCAGAACCCTGTGTTGTCAGGAAAGATGGAAAAACTATTTGAGAGGGAGGCAAAAGTTACACCTGAAAAGAAGAAAAGTAGCAAAATGACTATTTCCAGGAGTAGTAGTAACAAAAGTGCTTGCACACGAAAAGTATGTGCAATGCCTACATGGTTTGAGAGCTGGGAGCGTGAAGATACATATGCTGCTCTTGCTGTTGTTTGTGCTGCAGTCTCAGTTGCCATCGCCTGTCACTGCTACAAACAGTTGACGTAA 1329 47.18 MVALASQFQYEWNNRDDPLTFINPSSSPITVSSAEGDSFLLEPASQIGSASGSFQNEGLLSGGDGTSDAEFGFSRPDFRQSPLAGTVQLYDRHVFLCYKHPQVWPPRIEAAEFDRLPRLLSAALMARKSEMKKQTRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKDGEWQPVTPEKLIGSCIFVCSHGSRDRRCGVCGPAVVARFKEEIESHGLQGKVSVSPCSHIGGHKYAGNVIIFGSNIDGKVSGHWYGYVTPDDVPILLEQHIEKGEIVYGLWRGQMGLSEEEQTKSQELRVQLNGGTGDGKPTKETLQTQTNEMDTAACGSQIEVMACCQENGNSSCCQNPVLSGKMEKLFEREAKVTPEKKKSSKMTISRSSSNKSACTRKVCAMPTWFESWEREDTYAALAVVCAAVSVAIACHCYKQLT* 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8878189 8883497 + Vvi19g688 Vvi19g688 782187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g688 442 CDD TRX_Fd_Sucrase 197 296 IPR009737 -
Vvi19g688 442 Gene3D Glutaredoxin 91 190 - -
Vvi19g688 442 Gene3D Glutaredoxin 195 293 - -
Vvi19g688 442 SUPERFAMILY Thioredoxin-like 196 298 IPR036249 -
Vvi19g688 442 PANTHER SUCRASE-LIKE PROTEIN 67 441 - -
Vvi19g688 442 Pfam Sucrase/ferredoxin-like 83 294 IPR009737 -
Vvi19g688 442 PANTHER ACTIN PATCHES DISTAL PROTEIN 1 67 441 IPR009737 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g688 - - - vvi:100258311 861.292
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g688 . . . . Bpe09g00118 . . Bma13g01123 . . Cma01g01068 Cma09g01019 Car01g00944 Car09g00923 Sed04g3640 Cpe06g00827 Cpe02g00830 Bhi09g01790 Tan01g3206 Cmetu01g1047 . . Mch11g1291 . . . . . . . . Cone6ag0004 Cone9ag0007 . . . . . . . Blo10g00873 . Bda12g00973 . . . . . Cmo01g01110 Cmo09g01022 . . . . . . . . . . . . . Cla09g02087 Cam09g2174 Cec09g2240 . . . . . . Chy01g01131 Cme01g00886
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006682 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 3 1 0 1 1 1 1 38