Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g694 ATGCCTTCACAGAAGATCAAAACAGGTCACCAGGACACAGTCCATGATGTTGCCATGGATTACTATGGAAAGAGAGTGGCAACAGCTTCATCTGATAGCACCGTTAAGATAATTGGTGTTAGCAATAATGCTTCACAACACCTTGCTACTTTGACTGGCCATCAAGGCCCTGTTTGGCAGGTTGCTTGGGCACACCCCAAGTTTGGATCAATCCTTGCTTCTTGTTCCTGTGATGGCCGAGTGATAATCTGGAAGGAAGGAAATCAAAATGACTGGACACAAGCTCATGTTTTCAGTGATCGTAAATCATCTGTCAACTCCATTGCCTGGGCACCTCATGAACTTGGCCTCTGCTTGGCTTGTGGATCCTCTGATGGGAATATCTCTGTCTTCACTGCTAGGTCTGATGGCGCTTGGGACACCACAAAGATAGATCAAGCTCACCCTGTTGGAGTAACCTCAGTTTCATGGGCCCCATCAATGGCTCCTGGTGCTCTGGTTGGATCTGGTCTGCTGGATCCTGTTCAGAAGCTGGTTTCTGGTGGCTGTGATAATACTGTGAAGGTGTGGAAGCTATACAACGGGAATTGGAAGATGGACTGTTTCCCTGCTCTTCAGATGCATACAGATTGGGTAAGGGATGTGGCTTGGGCACCCAACTTGGGGCTTCCAAAGTCCACAATTGCAAGTGCTTCACAGGATGGAACAGTTGTAATATGGACTGTGGGCAAGGAAGGTGATCAATGGGAGGGTAAAGTTTTGAAGGATTTCAAGACCCCAGTTTGGAGGGTCTCATGGTCGCTGACTGGAAACCTATTGGCTGTGGCTGATGGAAACAATAATGTGACATTATGGAAAGAAGCAGTTGATGGTGAGTGGCAACAGGTTACTACAGTGGACCCATATCATTTAGCCTGA 918 47.39 MPSQKIKTGHQDTVHDVAMDYYGKRVATASSDSTVKIIGVSNNASQHLATLTGHQGPVWQVAWAHPKFGSILASCSCDGRVIIWKEGNQNDWTQAHVFSDRKSSVNSIAWAPHELGLCLACGSSDGNISVFTARSDGAWDTTKIDQAHPVGVTSVSWAPSMAPGALVGSGLLDPVQKLVSGGCDNTVKVWKLYNGNWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGTVVIWTVGKEGDQWEGKVLKDFKTPVWRVSWSLTGNLLAVADGNNNVTLWKEAVDGEWQQVTTVDPYHLA* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8932024 8934203 + Vvi19g694 Vvi19g694 782193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g694 305 SMART WD40_4 138 191 IPR001680 GO:0005515
Vvi19g694 305 SMART WD40_4 2 39 IPR001680 GO:0005515
Vvi19g694 305 SMART WD40_4 91 132 IPR001680 GO:0005515
Vvi19g694 305 SMART WD40_4 44 85 IPR001680 GO:0005515
Vvi19g694 305 SMART WD40_4 198 241 IPR001680 GO:0005515
Vvi19g694 305 SMART WD40_4 247 286 IPR001680 GO:0005515
Vvi19g694 305 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 242 - -
Vvi19g694 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 51 85 IPR001680 GO:0005515
Vvi19g694 305 PANTHER PROTEIN TRANSPORT PROTEIN SEC13 HOMOLOG B-LIKE 1 301 - -
Vvi19g694 305 PRINTS G protein beta WD-40 repeat signature 72 86 IPR020472 -
Vvi19g694 305 PRINTS G protein beta WD-40 repeat signature 178 192 IPR020472 -
Vvi19g694 305 PRINTS G protein beta WD-40 repeat signature 228 242 IPR020472 -
Vvi19g694 305 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 1 301 IPR037363 GO:0005198
Vvi19g694 305 Gene3D - 1 301 IPR015943 GO:0005515
Vvi19g694 305 SUPERFAMILY WD40 repeat-like 7 286 IPR036322 GO:0005515
Vvi19g694 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 7 48 IPR001680 GO:0005515
Vvi19g694 305 Pfam WD domain, G-beta repeat 206 240 IPR001680 GO:0005515
Vvi19g694 305 Pfam WD domain, G-beta repeat 146 191 IPR001680 GO:0005515
Vvi19g694 305 Pfam WD domain, G-beta repeat 5 37 IPR001680 GO:0005515
Vvi19g694 305 Pfam WD domain, G-beta repeat 46 85 IPR001680 GO:0005515
Vvi19g694 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 242 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g694 K14004 SEC13; protein transport protein SEC13 - vvi:100242906 646.351
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g694 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000675 3 6 3 4 3 3 5 3 3 3 3 3 5 3 2 4 3 3 5 3 2 3 3 3 2 3 2 5 5 1 99