Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g696 ATGGCCCCTGCAGCCCTTAATAAGAAAAAGGTCACAAAATCACAAAAACCTCCAGCTCAAAAGAAGCAAAAGAAGGAAGTTTTCACTGCTAAGCCTCCAAAGAAACACGACATTTCTGATGATTCTGATAGCCCAACTGAAGAAATAGTAGATCATGAAGGACTTTTTGAAGAAGAAAATGAAGAAGATGGGTTTGATTCTCATTCTGAAGCTTCTTCTGATGGAGATGATCCATTCACTGATGATTTCCTCCAAGGAGGTGATGATGAAGAGGAAGGTTCAGGTTCAGGTTCAGGTTCAGATTCAGATTCAGATTCAGATTCAGATGAATCTGATATTGAGAAGAAGTCAAGAGCTATTGATGAAGAAAGGGCAAGGGAAGAAGAAGAAGCAGGGGCTGAAATGCAGCTCAACATTAAAGAAGAATCTGACGAGTTCAGATTGCCAACCAAAGAGGAGCTTCAAGAAGAGGCACGCCAACCCCCTGATCTCCCAAATCTTCAGCGGAGGATAAAAGAAATTGTTCGAGTACTGTCAAATTTTAACTCTTTGAGGCAAGAGGGGGCTCAACGGAAGGATTATGTTGAGCAGCTCAGGGTCGATTTAGGTTCATACTATGGTTACAACGAATTCCTCATTGGGGTTTTGGTGGAGATGTTTCCTGTTGTTGAACTTATGGAACTTATTGAAGCTTTTGAAAAACCTCGACCTATTTGTCTACGGACGAATACCTTGAAGACACGTAGAAGGGATTTGGCTGATGTTCTGTTGAACAGAGGGGTAAATTTAGATCCCTTGAGCAAGTGGTCAAAAGTTGGTTTGGTCGTGTATGACTCACAAGTGCCAATTGGTGCCACTCCTGAATATATGGCTGGTTTTTACATGCTGCAAAGTGCAAGCTCATTTTTGCCTGTGATGGCTCTTGCCCCTCAAGAAAAGGAACGGATTGTTGATATGGCGGCTGCACCTGGTGGGAAGACAACCTACATTGCTGCTCTTATGAAAAACGGCGGGCTGCACCGGTGGGAAGACAACCTACATTGCTGCTCTTATGAAAAACAGCGGGATGATCTTCGCAAATGA 1083 43.21 MAPAALNKKKVTKSQKPPAQKKQKKEVFTAKPPKKHDISDDSDSPTEEIVDHEGLFEEENEEDGFDSHSEASSDGDDPFTDDFLQGGDDEEEGSGSGSGSDSDSDSDSDESDIEKKSRAIDEERAREEEEAGAEMQLNIKEESDEFRLPTKEELQEEARQPPDLPNLQRRIKEIVRVLSNFNSLRQEGAQRKDYVEQLRVDLGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNGGLHRWEDNLHCCSYEKQRDDLRK* 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8940758 8945632 + Vvi19g696 Vvi19g696 782195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g696 360 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 228 360 IPR001678 GO:0008168
Vvi19g696 360 Gene3D Sun protein; domain 3 194 299 - -
Vvi19g696 360 MobiDBLite consensus disorder prediction 1 166 - -
Vvi19g696 360 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 8 339 IPR023267 GO:0001510
Vvi19g696 360 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 224 301 IPR031341 -
Vvi19g696 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 201 337 IPR029063 -
Vvi19g696 360 MobiDBLite consensus disorder prediction 109 159 - -
Vvi19g696 360 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 191 211 IPR023273 GO:0008168
Vvi19g696 360 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 224 236 IPR023273 GO:0008168
Vvi19g696 360 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 247 260 IPR023273 GO:0008168
Vvi19g696 360 MobiDBLite consensus disorder prediction 19 51 - -
Vvi19g696 360 Pfam 16S rRNA methyltransferase RsmB/F 305 338 IPR001678 GO:0008168
Vvi19g696 360 PANTHER BNACNNG49010D PROTEIN 8 339 - -
Vvi19g696 360 Gene3D Vaccinia Virus protein VP39 300 358 IPR029063 -
Vvi19g696 360 Coils Coil 125 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g696 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - vvi:100265196 578.941
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g696 . . Bda07g00417 . . . . . . . . . Car01g00943 . Sed04g3639 . . Bhi09g01791 Tan01g3207 Cmetu01g1798 . . Mch11g1292 . . . . . . . . . . . . . . . . . . . . Bpe11g00594 . . . . . . . . . . . . . . . . . . . Cla09g02088 Cam09g2175 Cec09g2241 . . . . . . Chy01g01130 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42