Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g697 ATGGGTGTCACGAATACTGTGGTCTGTAACTACGATGGAAAAGAGCTGCCCAAGGTATTGGGTCACAATACAGTTGATAGAGTGTTATTGGATGCCCCTTGCAGCGGGACTGGGGTTATATCAAAAGATGAATCCGTCAAAACTTCTAAAAGCTTGGAAGATATACAGAAATGTGCTCATTTACAGAAGCAACTAATACTTGCTGCCATTGACATGGTGGATGCCAATTCAAAATCTGGGGGATATATTGTCTATTCCACGTGCTCGATAATGATTCCTGAGAATGAAGCAGTTATAGATTATGCACTGAAGAAGAGGAATGTAAAACTTGTACCATGTGGACTTGATTTTGGGCGTCCTGGGTTTACACGGTTTAGGGAACATCGGTTTCATCAATCATTAGAAAAGACTAGGCGTTTCTATCCCCATGTTCACAACATGGATGGATTTTTTGTGGCAAAGTTGAAGAAAATGAGCAACTCTAAGCCAAATCCAACACCGTCAGAACCATCAGAAGTGGAGGAGCAAGCTCCTGAGGAAAATGACAGTGACAGCGAATTGAACATGGGAGAAAAAACTCAACACATCCGGGTAAAAGAGGGACAAAAAAGGAAAATGGGGGTTTGA 627 41.95 MGVTNTVVCNYDGKELPKVLGHNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKQLILAAIDMVDANSKSGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFHQSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKPNPTPSEPSEVEEQAPEENDSDSELNMGEKTQHIRVKEGQKRKMGV* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8945633 8949046 + Vvi19g697 Vvi19g697 782196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g697 208 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 157 IPR029063 -
Vvi19g697 208 Gene3D Vaccinia Virus protein VP39 1 206 IPR029063 -
Vvi19g697 208 ProSitePatterns NOL1/NOP2/sun family signature. 25 36 IPR018314 GO:0003723|GO:0008168
Vvi19g697 208 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 1 158 IPR001678 GO:0008168
Vvi19g697 208 MobiDBLite consensus disorder prediction 185 208 - -
Vvi19g697 208 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 1 178 IPR023267 GO:0001510
Vvi19g697 208 PANTHER BNACNNG49010D PROTEIN 1 178 - -
Vvi19g697 208 Pfam 16S rRNA methyltransferase RsmB/F 1 156 IPR001678 GO:0008168
Vvi19g697 208 MobiDBLite consensus disorder prediction 158 208 - -
Vvi19g697 208 PRINTS RNA (C5-cytosine) methyltransferase signature 26 38 IPR023267 GO:0001510
Vvi19g697 208 PRINTS RNA (C5-cytosine) methyltransferase signature 80 96 IPR023267 GO:0001510
Vvi19g697 208 PRINTS RNA (C5-cytosine) methyltransferase signature 140 157 IPR023267 GO:0001510
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g697 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - vvi:100265196 390.193
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g697 . . . . . . . . . . Cma01g01067 Cma09g01020 Car01g00941 Car09g00924 . Cpe06g00828 Cpe02g00831 . . . . . . . . . . . . . . . . . . Lsi02g01817 . . . . . . . . . . Bma14g00675 . Cmo01g01109 Cmo09g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme01g00884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42