Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g70 ATGCTTGGCCAGCTGAAGGGTCTTGATTTGGATGGAACTTTACCTGATGAGTTTGGAAATCTTTCTTATCTGCAAGAACTTGATCTCTCCCGAAACTATATCAATGGATCGATCCCTACAAGTCTCGGTCGGCTTTCTCTTACCATTCTTGCTCTTGTTGGAAACAGAATCTCTGGGTCGATTCCTGAAGTAATCAGTAATATCAGTACACTTGAGGAGCTGGTCTTGGAAGCTAATCAGCTTGGAGAACATCTCCCTCCAAGTCTTGGAAAGTTGAGTCATTTAAGGAGACTTGTTCTTTCTGCAAACAATTTCACAGGAACAATACCAGAAAATTTTCACAATCTCAAGAACCTAACTGATTTTAGGATAGATGGGAATAATTTATCTGGGAAGATACCAGATTGGATTGGGAATTGGACCAAACTTGAGAAACTGTATCTGCAAGGCACATCAATGGACGGGCCCATTCCTTCTATTATATCCCAGTTGAAAAACTTAACCGAGTTGTTAATATCTGATTTGAGTGGACCGATTACATCTTTCCCCAATTTGAAGGATATGAACAAATTAAAAACATTGGTGATGAGAAATTGCTCCATTACAGGTGAAATCCCAGAAGACATTGGAAATATTGAAAGTTTAAAACTTTTAGACCTGAGCTTCAACAGACTGAGTGGTACAATTCCAAAGAGCTTTAAGCAAGAAAAGAAGGTGAAAACAAAACTCGATTTCATGTTTCTCACCAACAACTCACTGACTGGAGAAGTGCCCAGCTGGATAAGATCGGACACTGAAAACAAAATGACCCCTTGGTGCTTACAGAAGGATCTCCCTTGCTCTAGAAAAGCCAAATACTATTCCTTGTATATCAATTGTGGAGGAGAGGAAACAACTTTTAAAGGGAAGACATATGAAAAAGACAATAATGTTGAGGGTGCATCACAGTTCTTTACTGATAGTCTAGACAAATGGGCTTATAGCAGTACAGGGGTTTTCATAGGCAACCGGCATGGTAGTCACCTAGCTAAAAACGAATCTGCTTTGAACTCAAAGGATGCAGAGATCTACCAAACTGCTCGTCTTGCTCCCATCTCACTCAAGTATTATGGGCTTTGCTTGCAAAAGGGCAATTATAAAGTGCGACTCTACTTTGCTGAAATCATGTTTTTTACTAACCAGACATTTGGTAGCCCTGGGAAGCGCTTGTTCGATGTTTCAATTCAAGGGAATGTAGTTTTGAAGGATTTTAATATCATGGAAGAAGCTAAAGGTGCTGGTAAGGGCATTTATAAGGATTTTGATGCCTCTGTTGATGGTAGCACTCTGGAGATCCACTTATACTGGACAGGCAAAGGGACTAATTCCATTCCGGATGAAGGTGTATATGGGCCTCTTATATCTGCTATTGCAGTGACACCAAAATTCAATCCCAACCCGGGGCTGTCTGTTGGAGGTATCATCGGCATTGTGATACCTTCATGTGTGGTCCTCATATTGATTTTGGTACTCTTACGAATGAAAGGCTACTTAGGAGGAAAAGACCTTGAAGATAGAGAACTACGTGAGCTAGGGATGCAAACTGGTTATTTTAGTTTACGACAGATCAAAGCTGCTACCAATAACTTTGACTCTGCAAATAAGATTGGTGAAGGTGGATTTGGGCCAGTTTACAAGGGTGTACTGTCAGATGGTTCAGTAAGTGCTGTTAAGCAGCTCTCTTCTAAATCGAAGCAAGGGAACCGAGAATTTGTAAACGAAATAGGCATGATATCTGCCTTACAACACCCAAATCTTGTGAAGCTTTATGGCTGTTGTATCGAAGGAAACCAGTTGTTGCTCATATACGAATATTTGGAAAACAATAGTCTTGCACGTGCACTTTTTGGTTCTGATGAACAGCGGCTAAATTTGGACTGGCCAACTAGGAAGAAGATATGCTTGGGGATAGCAAGGGGATTGGCATATCTTCATGAAGAGTCAAGATTGAAAATTGTTCATAGAGATATAAAGGCAACAAATGTGCTGCTTGATAAGAATCTAAATGCTAAGATATCCGACTTTGGCTTGGCTAAGCTGGATGAAGACGAGAACACCCATATCAGCACACGGATAGCTGGAACAATAGGATACATGGCTCCTGAATATGCAACGAGGGGTTACTTGACCGACAAAGCTGATGTTTACAGCTTTGGAATTGTTGCTTTAGAGATTGTCAGCGGGAAAAGCAACACCAATTACAGGCCAAAGGAAGAGTTTGTTTATCTTCTTGATTGGGCTTATGTCCTGCACGAGCAGGGAAATCTTCTGGAGCTGGTGGATCCAAGTCTTGGTTCAAACTACTCAGAGGAGGAGGTGATGAGGATGCTGAACTTGGCCCTCTTATGCACCAACCAATCTCCCACTCTCAGGCCACCCATGTCCTCTGTAGTGAGTATGCTTGACGGCAAAATTGCAGTCCAAGCACCAACAATCAAGCATGATTCTATGAACCCGGATATGAGATTCAAAGCCTTTGAGAAGCTCTCACTGGACAGCCAGTCTCATGTCTCAGCATTCTCTGTAGACAGTCAGGTCCAAGGCAGCATATCACTTGATGGACCATGGATTGATTCCTCAATTTCCCTCCATAGCAGAGAAGAAACAAGGGACTTTTCTTCATCAAGCAAGCTTCTTACAGGACACCAAGATCTTTACAGTATACATTTGGACTGA 2715 41.69 MLGQLKGLDLDGTLPDEFGNLSYLQELDLSRNYINGSIPTSLGRLSLTILALVGNRISGSIPEVISNISTLEELVLEANQLGEHLPPSLGKLSHLRRLVLSANNFTGTIPENFHNLKNLTDFRIDGNNLSGKIPDWIGNWTKLEKLYLQGTSMDGPIPSIISQLKNLTELLISDLSGPITSFPNLKDMNKLKTLVMRNCSITGEIPEDIGNIESLKLLDLSFNRLSGTIPKSFKQEKKVKTKLDFMFLTNNSLTGEVPSWIRSDTENKMTPWCLQKDLPCSRKAKYYSLYINCGGEETTFKGKTYEKDNNVEGASQFFTDSLDKWAYSSTGVFIGNRHGSHLAKNESALNSKDAEIYQTARLAPISLKYYGLCLQKGNYKVRLYFAEIMFFTNQTFGSPGKRLFDVSIQGNVVLKDFNIMEEAKGAGKGIYKDFDASVDGSTLEIHLYWTGKGTNSIPDEGVYGPLISAIAVTPKFNPNPGLSVGGIIGIVIPSCVVLILILVLLRMKGYLGGKDLEDRELRELGMQTGYFSLRQIKAATNNFDSANKIGEGGFGPVYKGVLSDGSVSAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNSLARALFGSDEQRLNLDWPTRKKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNAKISDFGLAKLDEDENTHISTRIAGTIGYMAPEYATRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLHEQGNLLELVDPSLGSNYSEEEVMRMLNLALLCTNQSPTLRPPMSSVVSMLDGKIAVQAPTIKHDSMNPDMRFKAFEKLSLDSQSHVSAFSVDSQVQGSISLDGPWIDSSISLHSREETRDFSSSSKLLTGHQDLYSIHLD* 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 793324 800964 + Vvi19g70 Vvi19g70 781569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g70 904 Pfam Protein tyrosine and serine/threonine kinase 546 814 IPR001245 GO:0004672|GO:0006468
Vvi19g70 904 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 262 877 - -
Vvi19g70 904 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 200 - -
Vvi19g70 904 ProSiteProfiles Protein kinase domain profile. 543 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g70 904 Gene3D - 284 475 - -
Vvi19g70 904 Gene3D Transferase(Phosphotransferase) domain 1 619 828 - -
Vvi19g70 904 Pfam Leucine rich repeat 93 151 IPR001611 GO:0005515
Vvi19g70 904 Gene3D Phosphorylase Kinase; domain 1 514 618 - -
Vvi19g70 904 Pfam Malectin domain 288 470 IPR021720 -
Vvi19g70 904 CDD STKc_IRAK 549 816 - -
Vvi19g70 904 PANTHER - 3 200 - -
Vvi19g70 904 PANTHER - 262 877 - -
Vvi19g70 904 SUPERFAMILY Protein kinase-like (PK-like) 526 827 IPR011009 -
Vvi19g70 904 SMART serkin_6 543 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g70 904 Gene3D Ribonuclease Inhibitor 3 267 IPR032675 -
Vvi19g70 904 Pfam Leucine Rich Repeat 214 234 IPR001611 GO:0005515
Vvi19g70 904 ProSitePatterns Serine/Threonine protein kinases active-site signature. 665 677 IPR008271 GO:0004672|GO:0006468
Vvi19g70 904 SUPERFAMILY RNI-like 5 261 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g107 Vvi19g70 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76475 PF07714 PK_Tyr_Ser-Thr 1.90E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g70 - - vvi:100267526 1746.48