Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g704 ATGTTACTTCCTTTATTTCTTAACCATGAAGATAATCTAGTACTAAAGGACCGAGTTGGAGGCAAAAAAATTAAGAGTCGTTATCAGCAAACCGCGAAGATGCTTTTCGCTCTATCTTCATTCCCCATCCCTCAATCCCCAAACCGTAATCAAATCCATAACGTAAAACCTCAATCTTCAGAAACCCTCAAAATTGATCTTCTCCGCAACTTCAACTCTCCATTTGAGCTCAGACAAGTCCACGCTCAGATCATCAAAACCAACGCTCCTCTATCAATCCTCCCCCTTACTCGAGTTGGCCTTGTTTGCGCTTTCACTCCTTCCTTCCACTATGCTCAACAAATTTTCAAGTGCGTCGAAAAGCAAAAACCTGAGACTTTTGTATGGAATTCTTGTTTGAAAGCCTTAGCTGAAGGGGATTCTCCAATCGATGCAATTATGCTTTTTTATAGGTTGCGCCAGTATGATGTTTGCCCGGATACTTTCACTTGTTCTTCTGTTCTCAGGGCTTGTTTGAATCTATTGGACCTTTCAAATGGTAGAATTCTTCATGGGGTTGTAGAGAAAGTCGGATTTCGGTCATGGACTTCTATGATTGCAGGTTATGTTCAGTGTGGGAAGGCAAAGGAAGCTATTCATCTTTTTGCAAAGATGGAAGAAGCGGGGGTGAAGTGTAATGAGGTGACAGTGGTGGCTGTGCTTGCTGCTTGTGCTGATTTGGGTGCACTTGATTTGGGCATGAGGATTCATGAGTACTCAAATCGACATGGGTTTAAGAGGAATGTCCGTATTTCTAATACTCTAATTGATATGTATGTAAAATGTGGATGCTTGGAGGAAGCGTGTAAAGTTTTTGAAGAGATGGAAGAGCGAACTGTTGTGTCATGGTCAGCCATGATTGGAGGGCTGGCAATGCATGGACGAGCTGAGGAAGCTCTAAGACTCTTCTCTGATATGTCCCAGGTGGGCATTGAGCCCAATGGGGTCACTTTCATTGGACTCTTGCATGCTTGTAGTCACATGGGGTTGATAAGTGAGGGGCGCAGATTCTTTGCCAGCATGACTAGAGATTATGGAATAATTCCCCAGATTGAGCATTATGGTTGTATGGTTGATCTTCTGAGTAGGGCAGGGCTCCTTCATGAGGCCCACGAGTTCATCTTGAACATGCCAATGAAGCCAAATGGGGTTGTGTGGGGTGCTCTCCTTGGGGCATGTAGGGTACACAAAAATGTTGAAATGGCAGAAGAAGCAATCAAACACCTTCTTGAATTGGACCCACTTAATGATGGATACTATGTGGTGTTATCAAACATCTATGCCGAAGCAGGACGATGGGAAGACACAGCAAGAGTAAGGAAGTTCATGAAAGATCGACAAGTGAAGAAAACACCTGGGTGGAGTTCAATCACAGTAGATGGGGTGGTCCATGAGTTTGTGGCTGGGGAGGAGAGCCATCCTGACACAGAGCAGATATTCCAGAGGTGGGAAGAGCTGCTGGAAGAAATGAGGCTAAAAGGATATGTGCCAAACACTTCAGTGGTTCTGCTGGACATAGAAGAGGGTGAGAAGGTGAAATTTGTGTCTCGCCACAGTGAGAAACTAGCCCTGGTTTTTGGGCTAATGAACACACCAGCTGAAACACCGATTAGAATTATGAAGAATCTTCGTATCTGTGAGGACTGCCATTCTGCTTTCAAATTGATATCAGCAATTGTTAATAGAGAGATAGTCGTCCGTGACCGGAATCGCTTCCACTGCTTCAATGATAATTCTTGTTCTTGCAGGGACTACTGGTAG 1800 44.22 MLLPLFLNHEDNLVLKDRVGGKKIKSRYQQTAKMLFALSSFPIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW* 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9010620 9015289 - Vvi19g704 Vvi19g704 782203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g704 599 Pfam E motif 409 470 IPR046848 -
Vvi19g704 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vvi19g704 599 Gene3D Tetratricopeptide repeat domain 252 293 IPR011990 GO:0005515
Vvi19g704 599 TIGRFAM PPR: pentatricopeptide repeat domain 194 227 IPR002885 -
Vvi19g704 599 TIGRFAM PPR: pentatricopeptide repeat domain 294 327 IPR002885 -
Vvi19g704 599 TIGRFAM PPR: pentatricopeptide repeat domain 266 291 IPR002885 -
Vvi19g704 599 PANTHER - 61 193 - -
Vvi19g704 599 PANTHER - 194 592 - -
Vvi19g704 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vvi19g704 599 SUPERFAMILY TPR-like 272 447 IPR011990 GO:0005515
Vvi19g704 599 Pfam PPR repeat 266 291 IPR002885 -
Vvi19g704 599 Pfam PPR repeat 366 390 IPR002885 -
Vvi19g704 599 Pfam PPR repeat family 292 339 IPR002885 -
Vvi19g704 599 Pfam PPR repeat family 194 238 IPR002885 -
Vvi19g704 599 Pfam DYW family of nucleic acid deaminases 507 599 IPR032867 GO:0008270
Vvi19g704 599 Gene3D Tetratricopeptide repeat domain 72 251 IPR011990 GO:0005515
Vvi19g704 599 Gene3D Tetratricopeptide repeat domain 309 479 IPR011990 GO:0005515
Vvi19g704 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 291 IPR002885 -
Vvi19g704 599 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 61 193 - -
Vvi19g704 599 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 194 592 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g704 - - - vvi:100263516 819.305
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012180 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 0 1 1 0 1 0 1 22