Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g705 ATGGGCGGCGAGTTGAAATACGAGATCGCCCAGAACGCTTACATCAAGCTCGTCCTCCACGCCCTCAAGCACAAGACCGCCGCCGTCAACGCCGTCCTCCTCGGCCGCCTCGTCACCTCTACCGACGGTTCCCACACCCTCCAAATTTCCGACGCCGTACCTCTCTTCCACTCCCAGATCACCCTCCTTCCTCCTCTCGAAATCGCCCTTATTCAGATAGAGGAGTATTATGGGGCTCAAGACATGGGAATTGTGGGATATTTCCATGCGAATGAGAGGTTCGATGATGCTGAGCTGAGTAGCGTGGCCAAGAATATTGGAGATCACATTTATCGGTATTTCCCTCAGGCCGCGGTGATTTTGTTAGATAACAAGAAGCTTGAATCTTTGCCCAAGGGGAAAGACCGGAGTCCTGTGATGCAGCTTTACACAAAGGATGCATCCAAGAACTGGAGGCATGCTGGATCAGATGGAAGCAGCCAGCTGACCATCAAGGAGCCATCAGCCAATGTAGTCCTCTTGGATTATATTGCCTCAGAGAAATGGCAGGATATCATAGATTTTGATGACCACCTTGATGACATTAGCAAGGATTGGCTGAACCCAGAACTCTTCAAGTAA 621 50.56 MGGELKYEIAQNAYIKLVLHALKHKTAAVNAVLLGRLVTSTDGSHTLQISDAVPLFHSQITLLPPLEIALIQIEEYYGAQDMGIVGYFHANERFDDAELSSVAKNIGDHIYRYFPQAAVILLDNKKLESLPKGKDRSPVMQLYTKDASKNWRHAGSDGSSQLTIKEPSANVVLLDYIASEKWQDIIDFDDHLDDISKDWLNPELFK* 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9015338 9023045 - Vvi19g705 Vvi19g705 782204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g705 206 Pfam Uncharacterised protein family (UPF0172) 6 204 IPR005366 GO:0072546
Vvi19g705 206 CDD MPN_UPF0172 9 201 IPR005366 GO:0072546
Vvi19g705 206 ProSiteProfiles MPN domain profile. 7 141 IPR037518 -
Vvi19g705 206 PANTHER ER MEMBRANE PROTEIN COMPLEX SUBUNIT 8/9 HOMOLOG 1 206 - -
Vvi19g705 206 PANTHER ER MEMBRANE PROTEIN COMPLEX 1 206 IPR005366 GO:0072546
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g705 K23569 EMC8_9; ER membrane protein complex subunit 8/9 - vvi:100242919 405.216
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g705 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .