Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g707 ATGGGCGATGGAGGAGGAGGTGGAGGCGAAGATACCTCTAGTAGGGTTCTGATTCCGAAAGATGCAAGGAAGATGGTCCAAGATATTAAGGAGATCGCACGAAAGCATAGTGATGAGGATGTGTACGCAATGCTTCAGGAGTGCGCTATGGATCCTAATGAAGCTGTGCAGAGACTTCTCTATTTAGATACATTTCATGAGGTCAAGAAGAAACGTGATCGGAAAAAAGAGAGCTCAAACAACAGGGCATCTGAATCTGATAGGCGGAGATCAGGCATTCAAGGGCGAGGTGCTTGGACTGGTCGAGGGAACTATTCTTCTCATAACTTCTCTCATGACGCTGGTTTTGGGAGAAATGCTGCTCAAAAGGAAAATGGAGTCCATCCCAGGACAGCAAGAGGTTTTACACACTCTTCTTTACCACTTTCACGGAGAGCTCAAAATAATGCAACACCACCCAATGTGCCAAAATCTTCAACTGTCTCATCCAATGGTGCCTCAAGTGTTTCTAATGGAAGTTCTAATCATGTACTCGTTCCTGGATTGGCTGCTGGTGATGTTAACACTATCCCTAAAGATAATTCAGTTGCGATCATTAATAAATCTGGCAATGGACCGTCTGTGCTAATTAGTGGTGTGGAATGCCCTCCTGGTACCATGCCCAAGCATTCTTTTGCATCTGTAGTTGGAGTGAAGCAGGGAAGCTCTAATTCAACTTCTCATACGACTCCAACATCTGTATCAGGTGTTTATTCTTCTGCTTCAGATTCTGTACTGGTGCCATCTCCCAGTTCCTGTCTCCCTGATACTATGGGTACGATTAAGCATGAAGTGAGTCAAAGCGCAGGTGTTGAAACTAATCAGCTACCTGAACTTTCAGAATCCTTATCTTTGTCAACCCATGACGATTCTTTGATTATTGACTCTTCTTCTACTCATGAGAGCCAGTCATCACTGCAGTTTACTGGTCCATCAAAAGCTCCAGATTCAGAAACAGAGGTTGCAACTATGATAGCTGAAGATAATTCTCAGTTGATAACTGAGTCAAATGTTTCGGTTTTGGAAGAAGCTACTTCAAACCTGCACATCTCTGATGCTCGTCATGTCATCTTCAGAAACCATCTTCAAATCCCTGAAGCTTTAAAAAATGGTTTGGTTTTTGGAAGTTTCGATTCTAGTTTTTCACTAGGCTCGAAATATGCTAATGGTCCTGATGTTGAAAAGAGCCCTACACCAGCAGAATCTTCTCAGGAGAATATTGAAATTACTAAGGGGCCTTCTCCAAGCAATCAAAGTGTAGCCTCAACTGCACAAGAGGAAGATTATCCTGATCAACCTCAATCTCCTCCACATGCACCAGAAAATTTATCACCTCCAGTGGGCAGTGTCTCATCTGGTGCAGTTCCAAAGCATGATCAATCGAAGCAGGAGATGCTGTTGCCTACAGGAGGCCCTCATTTCCCTGTTGTTCAGCCTCTCCCAAACTATAGTTTTGGTTTCATGCCACCCATGCTAGGGAGCTCGCTTGTTCAATTTGAAGGACCTGATGCTCAGGCACAGGACAATTCTCACTCCCCAAATATTGTAAGGGGAAATTCTTTGGTCCTGTCAGCACCCAGTCCGACTCCACCTGCAACTCAACCTGCAGGTATCATGCAGACCTCCATTCCGGTCTCTCCACAGTCAGTTCCTGTTTTCCGACCACCTTATCCTCCAAACTATTTCCCATATAGCAACTACTATCCCCCATTCTATGTGCCACCAGCTATCCACCAATTTTTAAGCCACACTGGGTTTCCTCAACAACCTCCAACTGGAAATGTATATGTACCAACAGCAGCAACTGCTGCAGGAGTCAAATTGTCTCATCCACAATACAAGCCGGGGAATAACACTGGAAATTCAGGTCACATTGGAATTTTGCCTGGTTATGGTTCATACAGCACATCCCAAGTTGGTTACAGTCCCAGTTCAGCTGTGAATGCTGGAAGCTCTACCGCCAATGTGGATCTTGCAGCATCACAGTTGAAGGAAAACAATATCTACACAAACAGACAACAGAGTGAAGGTTCGGCTGTCTGGATTCCTGCTCCAGGCCATGATATATCCAGCTTGCAGTCCAATTCTTTGTTCAACCTTTCCACGCAGGGGCAGCATCCCACTTTTTCACCTGCACAGGCTGGTCATGGTGCCTTCACTGGAATGTATCACCCAACACAGACCATGGCTGCTCCCCCAACCGTTCACTCTCTTCTACAACAGTCTCAGTCTATGGCTGGATCTGTGGATATGATGGGGCCTCCAGGTAGTGGTTACCAGCCGCCTCAACATGCACAGATCAACTGGAATCCTAATTATTGA 2361 45.36 MGDGGGGGGEDTSSRVLIPKDARKMVQDIKEIARKHSDEDVYAMLQECAMDPNEAVQRLLYLDTFHEVKKKRDRKKESSNNRASESDRRRSGIQGRGAWTGRGNYSSHNFSHDAGFGRNAAQKENGVHPRTARGFTHSSLPLSRRAQNNATPPNVPKSSTVSSNGASSVSNGSSNHVLVPGLAAGDVNTIPKDNSVAIINKSGNGPSVLISGVECPPGTMPKHSFASVVGVKQGSSNSTSHTTPTSVSGVYSSASDSVLVPSPSSCLPDTMGTIKHEVSQSAGVETNQLPELSESLSLSTHDDSLIIDSSSTHESQSSLQFTGPSKAPDSETEVATMIAEDNSQLITESNVSVLEEATSNLHISDARHVIFRNHLQIPEALKNGLVFGSFDSSFSLGSKYANGPDVEKSPTPAESSQENIEITKGPSPSNQSVASTAQEEDYPDQPQSPPHAPENLSPPVGSVSSGAVPKHDQSKQEMLLPTGGPHFPVVQPLPNYSFGFMPPMLGSSLVQFEGPDAQAQDNSHSPNIVRGNSLVLSAPSPTPPATQPAGIMQTSIPVSPQSVPVFRPPYPPNYFPYSNYYPPFYVPPAIHQFLSHTGFPQQPPTGNVYVPTAATAAGVKLSHPQYKPGNNTGNSGHIGILPGYGSYSTSQVGYSPSSAVNAGSSTANVDLAASQLKENNIYTNRQQSEGSAVWIPAPGHDISSLQSNSLFNLSTQGQHPTFSPAQAGHGAFTGMYHPTQTMAAPPTVHSLLQQSQSMAGSVDMMGPPGSGYQPPQHAQINWNPNY* 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9040135 9050827 + Vvi19g707 Vvi19g707 782206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g707 786 MobiDBLite consensus disorder prediction 401 483 - -
Vvi19g707 786 MobiDBLite consensus disorder prediction 409 443 - -
Vvi19g707 786 MobiDBLite consensus disorder prediction 310 329 - -
Vvi19g707 786 PANTHER FLOCCULATION PROTEIN (DUF1296) 1 786 IPR044277 -
Vvi19g707 786 MobiDBLite consensus disorder prediction 69 172 - -
Vvi19g707 786 MobiDBLite consensus disorder prediction 69 92 - -
Vvi19g707 786 PANTHER GBF-INTERACTING PROTEIN 1-LIKE 1 786 - -
Vvi19g707 786 SUPERFAMILY UBA-like 18 81 IPR009060 GO:0005515
Vvi19g707 786 MobiDBLite consensus disorder prediction 136 172 - -
Vvi19g707 786 Pfam GBF-interacting protein 1 N-terminal 18 77 IPR009719 -
Vvi19g707 786 MobiDBLite consensus disorder prediction 310 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g707 - - - vvi:100258374 1426.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g731 Vvi19g707 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g707 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004266 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 43