Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g709 ATGGAGGAATCTCAAGAGATTCTACTGAGTTCACTGGCGAGCGCCGGAGTTTCGATTCCGACCTCCGTTTCTTCGATCCAAGACCTCACGCCAACGTCTCTTTTCTCGATCTGTGCTCAATCTCTTTCTCTGATCGATAATACGACGTCGTTTCCAACTTCTCTGCCCGATTCGATGGCGGAGAGGTTCAAGATCTGTACGGAAATTGCTTCCGCTGTCAAAAGTCTAGGGTACATGGGGGACATGAGCTTCCACAAGTTCTTGTATCCATCTGAAGAGGACTTGTATAAGTTGGTAAGATTTTTGGTGGAGAAGCTGCCTGAATCATCTGAAGGAGGAAAAACTGCTGGAGGAAATGATATCTGGGCTAGAGAGAAAATAAAGGAAGATGACTTGCCAAGCACTTCAAAGCACTGGATGGAGAAGCCTGATAATCAAGGGGTGGATCTACATTTTCCAAATGTTGGAGCCAAATTGAAAGATCTGAGACTGAAAAGTGAAGTGCAAGAGTTCTCAGATAATGAGGCTGAAAATGAGTCTGGTACTAGGGCCAATAAAGCTTATTCGATTCAGCAAAAGATGGACGGGGTGGCGGTTGTTGATGTTTCAATACCAGGGACACAAGATTTAAGCAAAAAGGAGCTGAATAGCTTGGAAAATGGAACAGACTTGGTTGAAAAATCTGAGGACTCTAGAAGAGATGCATCCGGAAATGAAGAAATGTCAACTCAGAGAGATGACAAAAACGTTTTGACTTCTTTTCAGGAGCAGTCACTCAAGATAAAAAGCAGGATTGAAATGTTACGAAATCAAGAAAAGTTACTCATAGAGGAGGTGAATTCTAAAAATTTAGAATCACAACATCTAGAAGAAGAATACAACTTGTTGAAATCAGCAATGGAAATGGAATTTGATGACCAGCATCCTGTTGACTTGTACATTGAGCAGCTCAATGAGCGAATAGAAGCTGGAAAGCGCAATCTTGTGGAACTGGAATCACAATGGGAGACTTTAAGAAAGCCTTTGGAAGAGAAAAAGAGAAGCCTTGAAGGATCTGTATATGCCACTGTACCAGGGGCTCAAGAAAAACTCCAAAAATTAAAAGAAGTTGAGCTGGAAAAGCAGTCAATCTTATATGAAATTAAAAAGAGGGAGGAAGAACATTCTAAACTATCTGCAGATCTGGAGAAGCAGCCCAAACTGCCCTCTAGGAGATCCTATATTCAGCGGATAACAGAGATCACAAAGAACAGCCGTAAACAAGATGCAGATATAGAGCGAATCTTAAAAGATACGAGGGAGCTCCAATTAGAAAGTAATTCTGTCCAAGAACGCCATCATCGAACTTATGCAGTGGTAGACGAAACAATTTTCAGGGAAGCCAAGAAAGATCCAGTAGGACGGCAAGCTTACATGCTCCTCACTAGCATCCATGAGAGCTTTGAACAGATTGCCGAGAAAATCCTTGCCACCGACCGGACACGAAGGGAGGTGACTGAACATGAGGCGAAGCTTGCAGCCATGGCCTCCCGAAGCTTGAACATCAACAAACTACAAGCTGATCTAGATGCCATCAGGCAGGAAAATGAGTGCCTAGAGCAACGCCTCCAAGATGATTCCTTAGATTCCTCGTCCTAA 1638 43.04 MEESQEILLSSLASAGVSIPTSVSSIQDLTPTSLFSICAQSLSLIDNTTSFPTSLPDSMAERFKICTEIASAVKSLGYMGDMSFHKFLYPSEEDLYKLVRFLVEKLPESSEGGKTAGGNDIWAREKIKEDDLPSTSKHWMEKPDNQGVDLHFPNVGAKLKDLRLKSEVQEFSDNEAENESGTRANKAYSIQQKMDGVAVVDVSIPGTQDLSKKELNSLENGTDLVEKSEDSRRDASGNEEMSTQRDDKNVLTSFQEQSLKIKSRIEMLRNQEKLLIEEVNSKNLESQHLEEEYNLLKSAMEMEFDDQHPVDLYIEQLNERIEAGKRNLVELESQWETLRKPLEEKKRSLEGSVYATVPGAQEKLQKLKEVELEKQSILYEIKKREEEHSKLSADLEKQPKLPSRRSYIQRITEITKNSRKQDADIERILKDTRELQLESNSVQERHHRTYAVVDETIFREAKKDPVGRQAYMLLTSIHESFEQIAEKILATDRTRREVTEHEAKLAAMASRSLNINKLQADLDAIRQENECLEQRLQDDSLDSSS* 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9054783 9058957 - Vvi19g709 Vvi19g709 782208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g709 545 Coils Coil 515 542 - -
Vvi19g709 545 Coils Coil 367 387 - -
Vvi19g709 545 MobiDBLite consensus disorder prediction 219 246 - -
Vvi19g709 545 PANTHER JM1 PROTEIN 1 537 IPR008530 -
Vvi19g709 545 MobiDBLite consensus disorder prediction 211 251 - -
Vvi19g709 545 Pfam Coiled-coil domain-containing protein 22 1 140 IPR008530 -
Vvi19g709 545 Pfam Coiled-coil domain-containing protein 22 164 507 IPR008530 -
Vvi19g709 545 Coils Coil 314 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g709 K23343 CCDC22; coiled-coil domain-containing protein 22 - vvi:100248115 1027.7
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g709 . . . . Bpe09g00115 . . Bma13g01126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00412 . Cme06g02760 . . . Bda12g00977 . . . . . . . . . . . Cpe14g00777 . Bhi11g00457 . . . . . . . . . . . . . . . Chy06g01900 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009968 1 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 33