Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g714 ATGAACACCCGGTACTTTTTCCCACCGGATTCACTCTGCAATTCAGGAATCTCGGTATCATTTTCATCCCTATCTCCAGCAGGAGAGGACAGAATGGCAGCTGGTGTGAGGAACAGATCTTCTCGGGCTCCCCCTTCATCGTTCCTGATAAGAACAGCTATGAGGATATCAAGGGCAAGGTGGTTTAGCTTCCTGAGAAGAGTGTTCCACTACCAGAATGGATCAAGATCTGATCTGGGCGCCAATCCTTTCAATTCCAGCACTTGGATGATACTGGAGTTTATAGCTTTGGTTGTTCAAATAGGCGTTATAACCTTCACTCTCTCGGTTTCCAAGGCTGAGAGGCCCGTCTGGCCTATGAGAATTTGGATAGTTGGATACGATTTCGGGTGTGTCCTAAGCTTGCTACTGCTCTACTGGCGTTACCAGCGCCCTTATTCAGCTCAAGGAGATGGTTTTAGCCTCCCTGACATTGAACAGCAGAGAAACAACGAAGAATCCAGGAGCTCCCATTTGATGAACAAGTGCCGGACTTCTCTTGAGCTTTTCTTTGCTATATGGTTCGTGATGGGCAATGTTTGGGTGTTCGACTCTCGCTTTGGATCGTTCCATCGAGCGCCAAAGCTTCATGTCCTCTGCATTACTCTGCTTGCCTGGAATGCTATTAGCTACTCTTTCCCATTCCTATTGTTTGTGCTGCTGTGTTGCTGCGTCCCACTGGTTAGCAACCTCCTAGGATACAACATGAACATGGGGTCAGTGGATAAAGGGGCGTCTGATGACCAAATTTCCAGGCTACCCAGCTGGAGATTCAAAGAAGCCAACGCCAATTTGGATCTCCCCAATGGCGCTGACAGCAATTCTCCTCTTTCAAGTGAATACCCTGAGTGCTGCATTTGCTTAGCTAAATACCGAGAAAAGGAAGAGGTGAGGCAGTTGCCGTGCTCACACATGTTTCACTTGAAGTGTGTGGATCAGTGGCTCAGGATCATATCTTGCTGCCCTCTTTGTAAGCAAGAAATTGAGAGATGA 1032 47.67 MNTRYFFPPDSLCNSGISVSFSSLSPAGEDRMAAGVRNRSSRAPPSSFLIRTAMRISRARWFSFLRRVFHYQNGSRSDLGANPFNSSTWMILEFIALVVQIGVITFTLSVSKAERPVWPMRIWIVGYDFGCVLSLLLLYWRYQRPYSAQGDGFSLPDIEQQRNNEESRSSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFHRAPKLHVLCITLLAWNAISYSFPFLLFVLLCCCVPLVSNLLGYNMNMGSVDKGASDDQISRLPSWRFKEANANLDLPNGADSNSPLSSEYPECCICLAKYREKEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQEIER* 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9082907 9084983 + Vvi19g714 Vvi19g714 782213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g714 343 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 23 342 - -
Vvi19g714 343 CDD RING-H2_RNF111_like 295 338 - -
Vvi19g714 343 SUPERFAMILY RING/U-box 296 341 - -
Vvi19g714 343 SMART ring_2 297 337 IPR001841 -
Vvi19g714 343 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 23 342 - -
Vvi19g714 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 342 IPR013083 -
Vvi19g714 343 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Vvi19g714 343 Pfam RING-like zinc finger 296 324 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g714 - - vvi:100260079 694.501